RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 CASP2P42575 452 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 PIK3CGP48736 1102 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 HLCSP50747 726 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 ALDH18A1P54886 795 aaKnown RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 RBPJQ06330 500 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 GTF2H2Q13888 395 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 NAA30Q147X3 362 aaPredicted RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 CPSF6Q16630 551 aaKnown RBP eCLIP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 TMEM35AQ53FP2 167 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 KHDRBS2Q5VWX1 349 aaKnown RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 ZNF787Q6DD87 383 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 GRHL2Q6ISB3 625 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 GTF2H2CQ6P1K8 395 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 C16orf47Q6ZP98 133 aaPredicted RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 GOLGA7Q7Z5G4 137 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 UBE3DQ7Z6J8 389 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 LAS2Q8IYD9 372 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 PLD6Q8N2A8 252 aaKnown RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 PTGR2Q8N8N7 351 aaPredicted RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 APCDD1LQ8NCL9 501 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 HUS1BQ8NHY5 278 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 SLC44A1Q8WWI5 657 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 ATP6V1E2Q96A05 226 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 CMTM7Q96FZ5 175 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 SCMH1Q96GD3 660 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 PAFAH2Q99487 392 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 MTERF1Q99551 399 aaKnown RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 CENPKQ9BS16 269 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 ALOXE3Q9BYJ1 711 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 OR8D2Q9GZM6 311 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 IPPKQ9H8X2 491 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 LIN28AQ9H9Z2 209 aaKnown RBP9.74□□□□□ -0.85
CAPN1-225ENST00000533704 LYRM4Q9HD34 91 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 CLCA3PQ9Y6N3 262 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 CACNA1CQ13936 2221 aa9.74□□□□□ -0.85
CAPN1-225ENST00000533704 C17orf105B2RV13 164 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 TRIM49D1C9J1S8 452 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 CCL21O00585 134 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ZNHIT1O43257 154 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ITGA10O75578 1167 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ZFAND5O76080 213 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 MLYCDO95822 493 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 HIST1H1TP22492 207 aaPredicted RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 RFC3P40938 356 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 SERPINB9P50453 376 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 CASP6P55212 293 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 RPS13P62277 151 aaKnown RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 PHEXP78562 749 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 TERF2Q15554 542 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ELAVL1Q15717 326 aaKnown RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 TECRLQ5HYJ1 363 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 OR4C11Q6IEV9 310 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 RELL1Q8IUW5 271 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 OR4N5Q8IXE1 308 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 CYP4Z2PQ8N1L4 340 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 TMEM132CQ8N3T6 1108 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 CPSF7Q8N684 471 aaKnown RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 KIF18AQ8NI77 898 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 RGMAQ96B86 450 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 REPS1Q96D71 796 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 PHF21BQ96EK2 531 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 MAGED4Q96JG8 741 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 FRMD6Q96NE9 622 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 GPR78Q96P69 363 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 DMRT3Q9NQL9 472 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 KCMF1Q9P0J7 381 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 SUCOQ9UBS9 1254 aaKnown RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ADGRE2Q9UHX3 823 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ZNF223Q9UK11 482 aaPredicted RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 NFU1Q9UMS0 254 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 ERVK-11Q9UQG0 969 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 RNF11Q9Y3C5 154 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 PCDHGB6Q9Y5F9 930 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 CLDN16Q9Y5I7 305 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 TNPO3Q9Y5L0 923 aaKnown RBP9.73□□□□□ -0.85
CAPN1-225ENST00000533704 NINQ8N4C6 2090 aa9.73□□□□□ -0.85
CAPN1-225ENST00000533704 A0A087WUV0 522 aaPredicted RBP9.72□□□□□ -0.85
CAPN1-225ENST00000533704 EXOC1LA0A1B0GW35 172 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 CCDC189A1A4V9 331 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 KIF2AO00139 706 aaPredicted RBP9.72□□□□□ -0.85
CAPN1-225ENST00000533704 WWP2O00308 870 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 KLK8O60259 260 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 PRKNO60260 465 aaPredicted RBP9.72□□□□□ -0.85
CAPN1-225ENST00000533704 NME2P1O60361 137 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 SLC19A2O60779 497 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 SMIM24O75264 130 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 PRKRAO75569 313 aaKnown RBP9.72□□□□□ -0.85
CAPN1-225ENST00000533704 OR2J2O76002 312 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 KRT38O76015 456 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 RBP1P09455 135 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 FREM3P0C091 2139 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 ZNF24P17028 368 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 NME2P22392 152 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 ECHS1P30084 290 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 PIK3CBP42338 1070 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 MEOX1P50221 254 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 SSR4P51571 173 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 SLAMF1Q13291 335 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 SERTAD2Q14140 314 aa9.72□□□□□ -0.85
CAPN1-225ENST00000533704 E2F2Q14209 437 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms