RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CD200R1	Q8TD46	325 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	UTP15	Q8TED0	518 aa	Known RBP	11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	NCLN	Q969V3	563 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	COX4I2	Q96KJ9	171 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	SGCZ	Q96LD1	299 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	RASL10B	Q96S79	203 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	PHACTR1	Q9C0D0	580 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	DPH5	Q9H2P9	285 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	LDAH	Q9H6V9	325 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	PLEKHF2	Q9H8W4	249 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	ADAP2	Q9NPF8	381 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	SYBU	Q9NX95	663 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF629	Q9UEG4	869 aa	Predicted RBP	11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZFP69B	Q9UJL9	534 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	MED16	Q9Y2X0	877 aa		11.52	□□□□□ -0.57
CAPN1-223	ENST00000533079	ABCA4	P78363	2273 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRGV5	A0A0B4J1U4	118 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	TUBAL3	A6NHL2	446 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	OR6B1	O95007	311 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	EPX	P11678	715 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	MGAT1	P26572	445 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	SOX3	P41225	446 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	GPR143	P51810	404 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	HSD17B7	P56937	341 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	NKX6-1	P78426	367 aa	Predicted RBP	11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	BASP1	P80723	227 aa	Known RBP	11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	DHX9	Q08211	1270 aa	Known RBP	11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	TBL3	Q12788	808 aa	Known RBP	11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	SLC10A1	Q14973	349 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	HSP90B2P	Q58FF3	399 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	ZNF470	Q6ECI4	717 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	NEPRO	Q6NW34	567 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	IL20RB	Q6UXL0	311 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	FAM47E	Q6ZV65	393 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	PIWIL4	Q7Z3Z4	852 aa	Known RBP	11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	CROCCP2	Q86T23	111 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	SCUBE1	Q8IWY4	988 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	PALM2	Q8IXS6	379 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	LMNTD2	Q8IXW0	634 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	LRRC75A-AS1	Q8N1F1	130 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRPV3	Q8NET8	790 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	FBXO25	Q8TCJ0	367 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	SACM1L	Q9NTJ5	587 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079	ASIC3	Q9UHC3	531 aa		11.51	□□□□□ -0.57
CAPN1-223	ENST00000533079		A0A0G2JMM0	328 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079		A0A1W2PPB8	328 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079		A0A1W2PRS3	328 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079		A8MUA0	341 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	KIR3DP1	A8MWS1	328 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	CLDN4	O14493	209 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	SLC16A5	O15375	505 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079		P04436	131 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	SERPIND1	P05546	499 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	NPPB	P16860	134 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	CD53	P19397	219 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	BMP5	P22003	454 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	RGS4	P49798	205 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	FOXO1	Q12778	655 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	HYAL2	Q12891	473 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	CTBP1	Q13363	440 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	NAE1	Q13564	534 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	SNTB1	Q13884	538 aa	Known RBP	11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	MORF4L2	Q15014	288 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	ELAVL1	Q15717	326 aa	Known RBP	11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	UGT3A1	Q6NUS8	523 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	HSDL2	Q6YN16	418 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	CHSY3	Q70JA7	882 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	GSTA5	Q7RTV2	222 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	CPNE9	Q8IYJ1	553 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	TMEM132C	Q8N3T6	1108 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	OR8K3	Q8NH51	312 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	GPR21	Q99679	349 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	TRIM31	Q9BZY9	425 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	PARVB	Q9HBI1	364 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	RYDEN	Q9NUL5	291 aa	Known RBP	11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	QPCTL	Q9NXS2	382 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	PDE10A	Q9Y233	779 aa		11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	MRPS33	Q9Y291	106 aa	Known RBP	11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.5	□□□□□ -0.57
CAPN1-223	ENST00000533079	ATP6AP2	A0A1C7CYW4	349 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	PABPN1L	A6NDY0	278 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	CLCA1	A8K7I4	914 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	DNALI1	O14645	258 aa	Predicted RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	PRKN	O60260	465 aa	Predicted RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	DNAJB6	O75190	326 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	ATP6AP2	O75787	350 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	LY6G6D	O95868	133 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	NUDT17	P0C025	328 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	ETS1	P14921	441 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	TPSB2	P20231	275 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	HIST1H2AD	P20671	130 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	ENDOU	P21128	410 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	RPL22	P35268	128 aa	Known RBP	11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	TIMP3	P35625	211 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	HSD17B3	P37058	310 aa		11.49	□□□□□ -0.57
CAPN1-223	ENST00000533079	SCTR	P47872	440 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms