RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CCNIQ14094 377 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 ANKRD26P1Q6NSI1 321 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 PTRH1Q86Y79 214 aaKnown RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 TRIML2Q8N7C3 387 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 Q8N9G6 341 aaPredicted RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 FAM47BQ8NA70 645 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 KCT2Q8NC54 265 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 GOT1L1Q8NHS2 421 aaPredicted RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 SERINC2Q96SA4 455 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MAP3K3Q99759 626 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MACROD1Q9BQ69 325 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 INPP5KQ9BT40 448 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 SYNPO2LQ9H987 977 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 ZNF282Q9UDV7 671 aaPredicted RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 CORO2BQ9UQ03 480 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 NEUROG3Q9Y4Z2 214 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 SPEGQ15772 3267 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MDC1Q14676 2089 aaKnown RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 IGHV1OR21-1A0A087WYE8 117 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 SLC9B1P1A6NJY1 282 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 NVLO15381 856 aaKnown RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 B4GAT1O43505 415 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 GSK3BP49841 420 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 FRMPD2BQ6IN97 320 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 SPRED1Q7Z699 444 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MSRB3Q8IXL7 192 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 CSNK1A1LQ8N752 337 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 OR8K5Q8NH50 307 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 NCSTNQ92542 709 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MIEF2Q96C03 454 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 PRDM9Q9NQV7 894 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 ACTR3BQ9P1U1 418 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 VPS4AQ9UN37 437 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 ASB4Q9Y574 426 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 SLC22A7Q9Y694 548 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 LOC105369274A0A096LPK9 316 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 LOC102723532A0A0G2JNH3 316 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 C1orf226A1L170 272 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 STATHP02808 62 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 ZNF888P0CJ79 500 aaPredicted RBP20.08■□□□□ 0.8
VPS28-212ENST00000530836 OR1D5P58170 312 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 MTPNP58546 118 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 RAB8AP61006 207 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 BTN3A2P78410 334 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 FXNQ16595 210 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 ZNF385BQ569K4 471 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 NDUFAF5Q5TEU4 345 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 NIPAL1Q6NVV3 410 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 ZFP1Q6P2D0 407 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 DHRS13Q6UX07 377 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 DNAJC14Q6Y2X3 702 aaPredicted RBP20.08■□□□□ 0.8
VPS28-212ENST00000530836 ZNF621Q6ZSS3 439 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 DHFR2Q86XF0 187 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 OR4N4Q8N0Y3 316 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 DNAJC22Q8N4W6 341 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 GOLM1Q8NBJ4 401 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 FAM156AQ8NDB6 213 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 ADAMTS14Q8WXS8 1223 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 MS4A12Q9NXJ0 267 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 PHF11Q9UIL8 331 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 PRDM4Q9UKN5 801 aa20.08■□□□□ 0.8
VPS28-212ENST00000530836 ASXL3Q9C0F0 2248 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 A0A0G2JN53 185 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 A0A1W2PRB8 838 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 C4orf51C9J302 202 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 P2RX6O15547 441 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 ZBTB11O95625 1053 aaPredicted RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 ALOX12P18054 663 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 MSX2P35548 267 aaPredicted RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 CCL7P80098 99 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 MAP7Q14244 749 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 TMEM214Q6NUQ4 689 aaKnown RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 WDR74Q6RFH5 385 aaPredicted RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 FAM92BQ6ZTR7 304 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 PROSER1Q86XN7 944 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 MCATQ8IVS2 390 aaKnown RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 BHLHE22Q8NFJ8 381 aaPredicted RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 SLC26A7Q8TE54 656 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 LRGUKQ96M69 825 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 TGM7Q96PF1 710 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 CPPED1Q9BRF8 314 aaPredicted RBP20.07■□□□□ 0.8
VPS28-212ENST00000530836 PCDHAC1Q9H158 963 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 LRRN3Q9H3W5 708 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 PDE7BQ9NP56 450 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 PCDHB3Q9Y5E6 796 aa20.07■□□□□ 0.8
VPS28-212ENST00000530836 CASC3O15234 703 aaKnown RBP20.06■□□□□ 0.8
VPS28-212ENST00000530836 B3GALT2O43825 422 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 CPSF4O95639 269 aaKnown RBP20.06■□□□□ 0.8
VPS28-212ENST00000530836 EIF2S1P05198 315 aaKnown RBP20.06■□□□□ 0.8
VPS28-212ENST00000530836 CDKN2CP42773 168 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 ALDH9A1P49189 494 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 SKP1P63208 163 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 INSM1Q01101 510 aaPredicted RBP20.06■□□□□ 0.8
VPS28-212ENST00000530836 CLECL1Q8IZS7 167 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 AMER3Q8N944 861 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 OR4A15Q8NGL6 344 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 ZBED6CLQ96FA7 236 aaPredicted RBP20.06■□□□□ 0.8
VPS28-212ENST00000530836 KAT8Q9H7Z6 458 aaKnown RBP20.06■□□□□ 0.8
VPS28-212ENST00000530836 FAM60AQ9NP50 221 aa20.06■□□□□ 0.8
VPS28-212ENST00000530836 ACSS1Q9NUB1 689 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms