RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CDCP1Q9H5V8 836 aa19.27■□□□□ 0.68
VPS28-206ENST00000526734 NOL11Q9H8H0 719 aaKnown RBP19.27■□□□□ 0.68
VPS28-206ENST00000526734 PPCSQ9HAB8 311 aa19.27■□□□□ 0.68
VPS28-206ENST00000526734 PNO1Q9NRX1 252 aaKnown RBP19.27■□□□□ 0.68
VPS28-206ENST00000526734 PSMC3IPQ9P2W1 217 aaPredicted RBP19.27■□□□□ 0.68
VPS28-206ENST00000526734 ESPL1Q14674 2120 aa19.27■□□□□ 0.67
VPS28-206ENST00000526734 PTPN13Q12923 2485 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 SEMA3DO95025 777 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 RPS17P08708 135 aaKnown RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 TAC1P20366 129 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 CPN2P22792 545 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 GCAP28676 217 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 TLX1P31314 330 aaPredicted RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 CD96P40200 585 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 ARL1P40616 181 aaPredicted RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 HNRNPFP52597 415 aaKnown RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 MLF1P58340 268 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 OC90Q02509 493 aaPredicted RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 OR1C1Q15619 314 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 ZRSR2Q15696 482 aaKnown RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 GGTA1PQ4G0N0 100 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 KIF2BQ8N4N8 673 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 FAM98AQ8NCA5 519 aaKnown RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 OR14A16Q8NHC5 309 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 WDR20Q8TBZ3 569 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 SERPINI1Q99574 410 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 MAPKAP1Q9BPZ7 522 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 C1QTNF3Q9BXJ4 246 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 TRIM45Q9H8W5 580 aaPredicted RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 LYARQ9NX58 379 aaKnown RBP19.26■□□□□ 0.67
VPS28-206ENST00000526734 VTI1BQ9UEU0 232 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 CLCA3PQ9Y6N3 262 aa19.26■□□□□ 0.67
VPS28-206ENST00000526734 TRBV11-1A0A0K0K1C0 115 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 A8MUA0 341 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 RTCAO00442 366 aaKnown RBP19.25■□□□□ 0.67
VPS28-206ENST00000526734 PLPP1O14494 284 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 MLYCDO95822 493 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 OTCP00480 354 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 IFNA16P05015 189 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 TRHRP34981 398 aaPredicted RBP19.25■□□□□ 0.67
VPS28-206ENST00000526734 RPS13P62277 151 aaKnown RBP19.25■□□□□ 0.67
VPS28-206ENST00000526734 SLC29A2Q14542 456 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 AMER2Q8N7J2 671 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 MORN4Q8NDC4 146 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 MYRIPQ8NFW9 859 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 SCMH1Q96GD3 660 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 TAAR6Q96RI8 345 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 ALOXE3Q9BYJ1 711 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 SLC5A6Q9Y289 635 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 RNF11Q9Y3C5 154 aa19.25■□□□□ 0.67
VPS28-206ENST00000526734 SPENQ96T58 3664 aaKnown RBP19.25■□□□□ 0.67
VPS28-206ENST00000526734 TGFBR3LH3BV60 316 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 OR7A17O14581 309 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 GSTA1P08263 222 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 FAM153BP0C7A2 387 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 COX7A2P14406 83 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 TNFRSF8P28908 595 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 TPP2P29144 1249 aaPredicted RBP19.24■□□□□ 0.67
VPS28-206ENST00000526734 BUD31P41223 144 aaPredicted RBP19.24■□□□□ 0.67
VPS28-206ENST00000526734 CYB561P49447 251 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 TRAF3Q13114 568 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 SLAMF1Q13291 335 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 FAM153CQ494X1 144 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 FRG2Q64ET8 278 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 CLNKQ7Z7G1 428 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 GPR180Q86V85 440 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 NUDT13Q86X67 352 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 TANKQ92844 425 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 PSMG3-AS1Q96PY0 264 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 FRG2BQ96QU4 278 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 PELOQ9BRX2 385 aaKnown RBP19.24■□□□□ 0.67
VPS28-206ENST00000526734 DDX31Q9H8H2 851 aaKnown RBP19.24■□□□□ 0.67
VPS28-206ENST00000526734 LRFN1Q9P244 771 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 FBXW2Q9UKT8 454 aa19.24■□□□□ 0.67
VPS28-206ENST00000526734 A8MT66 165 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 SAP18O00422 153 aaKnown RBP19.23■□□□□ 0.67
VPS28-206ENST00000526734 DYRK3O43781 588 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 SEMA7AO75326 666 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 SH3BGRLO75368 114 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 ZFAND5O76080 213 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 HLCSP50747 726 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 GPR143P51810 404 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 TDGF1P3P51864 188 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 IGLV3-21P80748 117 aaPredicted RBP19.23■□□□□ 0.67
VPS28-206ENST00000526734 TNFRSF17Q02223 184 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 IFT88Q13099 833 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 TTC19Q6DKK2 380 aaPredicted RBP19.23■□□□□ 0.67
VPS28-206ENST00000526734 SLC25A25Q6KCM7 469 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 GPALPP1Q8IXQ4 340 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 OR52B6Q8NGF0 335 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 ZNF483Q8TF39 744 aaPredicted RBP19.23■□□□□ 0.67
VPS28-206ENST00000526734 NCLNQ969V3 563 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 TMEM125Q96AQ2 219 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 SIGLEC12Q96PQ1 595 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 RPF2Q9H7B2 306 aaKnown RBP19.23■□□□□ 0.67
VPS28-206ENST00000526734 WDR41Q9HAD4 459 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 ZBTB26Q9HCK0 441 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 RYDENQ9NUL5 291 aaKnown RBP19.23■□□□□ 0.67
VPS28-206ENST00000526734 STK38LQ9Y2H1 464 aa19.23■□□□□ 0.67
VPS28-206ENST00000526734 HECTD1Q9ULT8 2610 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms