RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ALPIP09923 528 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UQCRFS1P1P0C7P4 283 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RSPH10BP0C881 870 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PABPC4LP0CB38 370 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZCCHC18P0CG32 403 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SP9P0CG40 484 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE12FP0CL80 117 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE12GP0CL81 117 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE12IP0CL82 117 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STAG3L1P0CL83 205 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STAG3L2P0CL84 134 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSMCR30P0CW71 290 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR8G3PP0DMU2 310 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIAL4GP0DN37 164 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRKAR1AP10644 381 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNMTP11086 282 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP19A1P11511 503 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CETPP11597 493 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRPS2P11908 318 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ODC1P11926 461 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FCGR1AP12314 374 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UNGP13051 313 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRF1P14222 555 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IRF2P14316 349 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GP9P14770 177 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 POU2F1P14859 743 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANPEPP15144 967 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HPGDP15428 266 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GNSP15586 552 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ST6GAL1P15907 406 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF23P17027 643 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP11B2P19099 503 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRMP19623 302 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EDN2P20800 178 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP2B6P20813 491 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAOAP21397 527 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 S1PR1P21453 382 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NT5EP21589 574 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PAICSP22234 425 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HRH2P25021 359 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UCP1P25874 307 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZFP36P26651 326 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFS1P28331 727 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NMBRP28336 390 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRDX6P30041 224 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPP2R1AP30153 589 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NMT1P30419 496 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SSTR1P30872 391 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RRM2P31350 389 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKT2P31751 481 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRDX2P32119 198 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARRB2P32121 409 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSTF2P33240 577 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 S100A5P33763 92 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADRA1AP35348 466 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRIM23P36406 574 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHRNA7P36544 502 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DLSTP36957 453 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 AVPR1AP37288 418 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDKN1AP38936 164 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HTR2BP41595 481 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GRIA1P42261 906 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTGFRP43088 359 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEA8P43361 318 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEB1P43366 347 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TNFRSF4P43489 277 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NAMPTP43490 491 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDKN1BP46527 198 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPL21P46778 160 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR3A1P47881 315 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR3A3P47888 321 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LEPRP48357 1165 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RFX2P48378 723 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SOX2P48431 317 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC1A6P48664 564 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC11A1P49279 550 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FNTAP49354 379 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACADVLP49748 655 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RGS4P49798 205 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RASSF2P50749 326 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB9AP51151 201 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MMP15P51511 669 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCR4P51679 360 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLCN4P51793 760 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLCN5P51795 746 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NR0B1P51843 470 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPMP52272 730 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTSCP53634 463 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CRYBB1P53674 252 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAPK12P53778 367 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAZP56270 477 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTCP1P56278 107 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLDN15P56746 228 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLDN8P56748 225 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GSCP56915 257 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NLRP11P59045 1033 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SELENOVP59797 346 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZP1P60852 638 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPKP61978 463 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 YWHAEP62258 255 aaKnown RBP0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms