RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PROM1O43490 865 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 CSN2P05814 226 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 MRPL3P09001 348 aaKnown RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 CYBAP13498 195 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 MAGEA3P43357 314 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 MASP1P48740 699 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 CRISP1P54107 249 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 FPGSQ05932 587 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 GRSF1Q12849 480 aaKnown RBP eCLIP12.16□□□□□ -0.46
USP53-209ENST00000514665 ENPP2Q13822 863 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 NFE2L1Q14494 772 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 DEFB134Q4QY38 66 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 KCTD11Q693B1 232 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 SLC27A4Q6P1M0 643 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 FAM217AQ8IXS0 508 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 TOMM5Q8N4H5 51 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 OR7G3Q8NG95 312 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 NEK7Q8TDX7 302 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 BTBD1Q9H0C5 482 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 LINC00597Q9H2U6 94 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 NEK6Q9HC98 313 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 TRIM36Q9NQ86 728 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 CENPMQ9NSP4 180 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 HSPB11Q9Y547 144 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 BACE2Q9Y5Z0 518 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 TMEM150CB9EJG8 249 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 LATO43561 262 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 PCDHGA12O60330 932 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ZNF821O75541 412 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 ZNF823P16415 610 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 PUM1Q14671 1186 aaKnown RBP eCLIP12.16□□□□□ -0.46
USP53-209ENST00000514665 PON3Q15166 354 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 SPNS2Q8IVW8 549 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 DRAXINQ8NBI3 349 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 GPR150Q8NGU9 434 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 PROKR1Q8TCW9 393 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 TM9SF2Q99805 663 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 KXD1Q9BQD3 176 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 PNO1Q9NRX1 252 aaKnown RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 A0A1W2PP55 124 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 TCRBV3S1A0A5B6 114 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 H3BMQ9 156 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 SLC16A5O15375 505 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 BCAS1O75363 584 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 HSD3B1P14060 373 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 HOXB2P14652 356 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ITIH1P19827 911 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 EDNRAP25101 427 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 HSD3B2P26439 372 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 GSTM2P28161 218 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 VIPR2P41587 438 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 CTSOP43234 321 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 NRIP1P48552 1158 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 AP2S1P53680 142 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 TSPAN5P62079 268 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ADAM8P78325 824 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ZNF776Q68DI1 518 aaPredicted RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 CNTN4Q8IWV2 1026 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 OR8H3Q8N146 312 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 KLHDC9Q8NEP7 349 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 GRPEL2Q8TAA5 225 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 TRUB1Q8WWH5 349 aaKnown RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 COG8Q96MW5 612 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 FRMD6Q96NE9 622 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 BIRC8Q96P09 236 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 SLC12A9Q9BXP2 914 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 AGPAT4Q9NRZ5 378 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 ERVK13-1Q9NX77 482 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 RBM7Q9Y580 266 aaKnown RBP12.16□□□□□ -0.46
USP53-209ENST00000514665 PCDHGA8Q9Y5G5 932 aa12.16□□□□□ -0.46
USP53-209ENST00000514665 A0A1W2PRQ8 180 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 BLOC1S5-TXNDC5H3BN57 136 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 ADAM12O43184 909 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 PENKP01210 267 aaPredicted RBP12.15□□□□□ -0.46
USP53-209ENST00000514665 SDC1P18827 310 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 CBLP22681 906 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 MORN1Q5T089 497 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 C22orf42Q6IC83 251 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 CCBE1Q6UXH8 406 aaPredicted RBP12.15□□□□□ -0.46
USP53-209ENST00000514665 SPATC1Q76KD6 591 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 CLEC14AQ86T13 490 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 GALNT12Q8IXK2 581 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 OR8J1Q8NGP2 316 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 LRR1Q96L50 414 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TRIB3Q96RU7 358 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 SECISBP2Q96T21 854 aaKnown RBP12.15□□□□□ -0.46
USP53-209ENST00000514665 DPH7Q9BTV6 452 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TAPBPLQ9BX59 468 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 STOML2Q9UJZ1 356 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 A0A1W2PPK0 400 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 A0A1W2PQ72 361 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TSPAN9O75954 239 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 AGR2O95994 175 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 ITGA3P26006 1051 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 SLAMF1Q13291 335 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 NNATQ16517 81 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 CATSPEREQ5SY80 951 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 ABHD13Q7L211 337 aa12.15□□□□□ -0.46
USP53-209ENST00000514665 TAS1R1Q7RTX1 841 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms