RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 SCML2Q9UQR0 700 aa10.82□□□□□ -0.68
TCOF1-211ENST00000513346 ZNF780BQ9Y6R6 833 aa10.82□□□□□ -0.68
TCOF1-211ENST00000513346 CACNA1SQ13698 1873 aa10.82□□□□□ -0.68
TCOF1-211ENST00000513346 METTL21EPA6NDL7 271 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 METTL15A6NJ78 407 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CPSF4LA6NMK7 179 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 DISC1C4P0D8 188 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 ITGA10O75578 1167 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 EPOP01588 193 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 LRRC73Q5JTD7 316 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SLX4IPQ5VYV7 408 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TMEM220Q6QAJ8 160 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 LRRN1Q6UXK5 716 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 OR52B6Q8NGF0 335 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 C15orf40Q8WUR7 153 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CCDC107Q8WV48 283 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SLC9A6Q92581 669 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SHDQ96IW2 340 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TSNAXQ99598 290 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 HOXD1Q9GZZ0 328 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 OR51V1Q9H2C8 321 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CTPS2Q9NRF8 586 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 RHCGQ9UBD6 479 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 A0A1B0GVI7 797 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PROM1O43490 865 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 JRKO75564 520 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SAGP10523 405 aaPredicted RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 LHCGRP22888 699 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 HOXD11P31277 338 aaPredicted RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 GHRHRQ02643 423 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SMN1Q16637 294 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CLPPQ16740 277 aaPredicted RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 LRRC26Q2I0M4 334 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 C2orf27AQ580R0 203 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CARD16Q5EG05 197 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CLEC12AQ5QGZ9 265 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PELI3Q8N2H9 469 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SLC5A8Q8N695 610 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TBX5Q99593 518 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SMOC2Q9H3U7 446 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TRIM36Q9NQ86 728 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 GLTPQ9NZD2 209 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 COPZ2Q9P299 210 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PCTPQ9UKL6 214 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 MTMR11A4FU01 709 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PRMT3O60678 531 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 POLR2IP36954 125 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 HNMTP50135 292 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 FAPQ12884 760 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PDGFRLQ15198 375 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TOMM20Q15388 145 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SF3A2Q15428 464 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 C9orf64Q5T6V5 341 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SLC36A4Q6YBV0 504 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SLC39A5Q6ZMH5 540 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 RFPL4BQ6ZWI9 263 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 C1orf52Q8N6N3 182 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 POMGNT2Q8NAT1 580 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 OR2T35Q8NGX2 323 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 ACOT12Q8WYK0 555 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 EXOSC8Q96B26 276 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SLCO4A1Q96BD0 722 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PIP5K1AQ99755 562 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 NIPAL2Q9H841 368 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 DZANK1Q9NVP4 752 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 ZSCAN32Q9NX65 697 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 KCNN3Q9UGI6 736 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 HS3ST4Q9Y661 456 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 COLEC10Q9Y6Z7 277 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TMX2-CTNND1H3BSU7 103 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 ARL6IP5O75915 188 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 FGF18O76093 207 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 IQCF3P0C7M6 154 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TRAPPC2P0DI81 140 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TRAPPC2BP0DI82 140 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 GGT2P36268 569 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 RBM34P42696 430 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 FNTBP49356 437 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 CLDN8P56748 225 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 RACK1P63244 317 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 FAM180AQ6UWF9 173 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 FAM198BQ6UWH4 519 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SNX20Q7Z614 316 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 PTRH1Q86Y79 214 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 INO80EQ8NBZ0 244 aaPredicted RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 TCEAL4Q96EI5 215 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 IMP4Q96G21 291 aaKnown RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 RSPH9Q9H1X1 276 aaPredicted RBP10.81□□□□□ -0.68
TCOF1-211ENST00000513346 SUV39H2Q9H5I1 410 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 NUDT15Q9NV35 164 aa10.81□□□□□ -0.68
TCOF1-211ENST00000513346 COL22A1Q8NFW1 1626 aaPredicted RBP10.8□□□□□ -0.68
TCOF1-211ENST00000513346 MYO18AQ92614 2054 aaKnown RBP10.8□□□□□ -0.68
TCOF1-211ENST00000513346 TEX13CA0A0J9YWL9 993 aa10.8□□□□□ -0.68
TCOF1-211ENST00000513346 TCRBV5S1A1TA0A578 114 aa10.8□□□□□ -0.68
TCOF1-211ENST00000513346 CAPN5O15484 640 aaPredicted RBP10.8□□□□□ -0.68
TCOF1-211ENST00000513346 FHP07954 510 aa10.8□□□□□ -0.68
TCOF1-211ENST00000513346 NAT1P18440 290 aa10.8□□□□□ -0.68
TCOF1-211ENST00000513346 FSHRP23945 695 aa10.8□□□□□ -0.68
TCOF1-211ENST00000513346 HOXA11P31270 313 aaPredicted RBP10.8□□□□□ -0.68
TCOF1-211ENST00000513346 HSPB3Q12988 150 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms