RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NDST2P52849 883 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 YBEYP58557 167 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 HILS1P60008 231 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 KRTAP10-9P60411 292 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 ABCE1P61221 599 aaKnown RBP3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 ERVK11-1P61568 191 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 MFGE8Q08431 387 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 RBBP4Q09028 425 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 CALCOCO2Q13137 446 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 KIAA0141Q14154 515 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 MEF2DQ14814 521 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 KRT31Q15323 416 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 CT45A2Q5DJT8 189 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 GDPGP1Q6ZNW5 385 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 C17orf64Q86WR6 236 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZFAND4Q86XD8 727 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 CHCHD4Q8N4Q1 142 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 GPATCH11Q8N954 259 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 NEK11Q8NG66 645 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 C11orf45Q8TAV5 145 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 AGAP3Q96P47 875 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 AGPAT1Q99943 283 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 TRIM51Q9BSJ1 452 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 PINK1Q9BXM7 581 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 TEX13AQ9BXU3 409 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 GANQ9H2C0 597 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 DCLRE1BQ9H816 532 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 KCNMB3Q9NPA1 279 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 DDX28Q9NUL7 540 aaKnown RBP3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 ACOXLQ9NUZ1 547 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 NUDT4Q9NZJ9 180 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 FETUBQ9UGM5 382 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 IL19Q9UHD0 177 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 TSPAN16Q9UKR8 245 aa3.41□□□□□ -1.86
HMGB1P28-201ENST00000507778 IGHV3-20A0A0C4DH32 117 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLC9B1P1A6NJY1 282 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 SHISA7A6NL88 538 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 TRAFD1O14545 582 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 IDH3BO43837 385 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 BCAS2O75934 225 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 DPEP1P16444 411 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 UGT1A4P22310 534 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 GPX3P22352 226 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 FCGR2BP31994 310 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 FCGR2CP31995 323 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 NSFP46459 744 aaKnown RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 CNN1P51911 297 aaKnown RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 CRYBA2P53672 197 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 PPP1R8Q12972 351 aaKnown RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 NFATC2Q13469 925 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 HEPACAMQ14CZ8 416 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR1C1Q15619 314 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 FAAP20Q6NZ36 180 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 ZNF613Q6PF04 617 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR4N5Q8IXE1 308 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 AQP11Q8NBQ7 271 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR4L1Q8NH43 312 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 GOLGA5Q8TBA6 731 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 URGCPQ8TCY9 931 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 LIPHQ8WWY8 451 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 GLYATL1Q969I3 302 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 SLCO4A1Q96BD0 722 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 MOCOSQ96EN8 888 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 DTD2Q96FN9 168 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 PCED1BQ96HM7 432 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 CXorf58Q96LI9 332 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 SPATA13Q96N96 652 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 ALKBH3Q96Q83 286 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 WWP1Q9H0M0 922 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 PARLQ9H300 379 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 DPEP3Q9H4B8 488 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 PLEKHA3Q9HB20 300 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 IL1RAPQ9NPH3 570 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 PIGVQ9NUD9 493 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 ANO10Q9NW15 660 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 TRIM10Q9UDY6 481 aa3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 ERRFI1Q9UJM3 462 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 STRAPQ9Y3F4 350 aaKnown RBP3.4□□□□□ -1.87
HMGB1P28-201ENST00000507778 GPRASP1Q5JY77 1395 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 IGHV4-30-2A0A087WSY4 118 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 IGHV3-38A0A0C4DH36 116 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 MACROD2A1Z1Q3 448 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 H7C423 109 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 CHEK1O14757 476 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 DCXO43602 365 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 HTATSF1O43719 755 aaKnown RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 KIAA0513O60268 411 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 OR6A2O95222 327 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 CXCL14O95715 111 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TXNDC12O95881 172 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 TPBGLP0DKB5 382 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 GLRA1P23415 457 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 ALDH3B1P43353 468 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 HNRNPFP52597 415 aaKnown RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 GEMP55040 296 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 CASP9P55211 416 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 HERV-K104P63124 156 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 HSPA14Q0VDF9 509 aa3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 MLF2Q15773 248 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P28-201ENST00000507778 UPP1Q16831 310 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms