RNA–Protein interactions for RNA: ENST00000507459.5

CCHCR1-222, Transcript of coiled-coil alpha-helical rod protein 1, human

TSL 5

Gene CCHCR1, Length 582 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCHCR1-222	ENST00000507459	FAM219B	Q5XKK7	198 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FRG2	Q64ET8	278 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	LCA5	Q86VQ0	697 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	NFAM1	Q8NET5	270 aa	Predicted RBP	13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SUN3	Q8TAQ9	357 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ELP5	Q8TE02	316 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TRPC4AP	Q8TEL6	797 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FRG2B	Q96QU4	278 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	NPAS2	Q99743	824 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ALOXE3	Q9BYJ1	711 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	AGPAT4	Q9NRZ5	378 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ABI3	Q9P2A4	366 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	DCDC2	Q9UHG0	476 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLDN16	Q9Y5I7	305 aa		13.23	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TRBV11-1	A0A0K0K1C0	115 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TLDC2	A0PJX2	215 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FOXE1	O00358	373 aa	Predicted RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	EED	O75530	441 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SCEL	O95171	688 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OTC	P00480	354 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GBA	P04062	536 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GSTA1	P08263	222 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TNNI3	P19429	210 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ATP5F1	P24539	256 aa	Predicted RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	HERVK_113	P63132	956 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OC90	Q02509	493 aa	Predicted RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLC	Q05315	142 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	MRPL49	Q13405	166 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CUL3	Q13618	768 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	UNC50	Q53HI1	259 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ZNF678	Q5SXM1	525 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	LETMD1	Q6P1Q0	360 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CYP20A1	Q6UW02	462 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GPR180	Q86V85	440 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	RPS19BP1	Q86WX3	136 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OR4N5	Q8IXE1	308 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	B3GNT7	Q8NFL0	401 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OR2W6P	Q8NHA6	318 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GRHL3	Q8TE85	626 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	THAP3	Q8WTV1	239 aa	Predicted RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SREK1	Q8WXA9	508 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TMEM237	Q96Q45	408 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SERPINI1	Q99574	410 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	UTP23	Q9BRU9	249 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	C1QTNF3	Q9BXJ4	246 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ERVK-6	Q9BXR3	956 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	DEFB126	Q9BYW3	111 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	RNF32	Q9H0A6	362 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ELOVL6	Q9H5J4	265 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ADAP2	Q9NPF8	381 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLCA3P	Q9Y6N3	262 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CPAMD8	Q8IZJ3	1885 aa		13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PRRC2C	Q9Y520	2896 aa	Known RBP	13.22	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ESPL1	Q14674	2120 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GABRR3	A8MPY1	467 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ESPN	B1AK53	854 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GLRA3	O75311	464 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PRKRA	O75569	313 aa	Known RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	OR4F21	O95013	312 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	IMPDH1	P20839	514 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TLX1	P31314	330 aa	Predicted RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	BSG	P35613	385 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CD96	P40200	585 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CLCN2	P51788	898 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	HNRNPH2	P55795	449 aa	Known RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TUBA3C	Q13748	450 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	GGTA1P	Q4G0N0	100 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	C18orf63	Q68DL7	685 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TUBA3E	Q6PEY2	450 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FAM180A	Q6UWF9	173 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TDRP	Q86YL5	185 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SLC22A9	Q8IVM8	553 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	CNPY4	Q8N129	248 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ZCCHC7	Q8N3Z6	543 aa	Known RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	SELENOM	Q8WWX9	145 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	NCLN	Q969V3	563 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ZNF717	Q9BY31	904 aa	Predicted RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	RPF2	Q9H7B2	306 aa	Known RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PPCS	Q9HAB8	311 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	FARSB	Q9NSD9	589 aa	Known RBP	13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	MS4A12	Q9NXJ0	267 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PSD3	Q9NYI0	1048 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	PHF11	Q9UIL8	331 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	ATG4B	Q9Y4P1	393 aa		13.21	□□□□□ -0.29
CCHCR1-222	ENST00000507459	TMPRSS11D	O60235	418 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	FGF17	O60258	216 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	PRAMEF2	O60811	474 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	CDH16	O75309	829 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	PDYN	P01213	254 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	FAM58BP	P0C7Q3	252 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	MYL2	P10916	166 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	TPP2	P29144	1249 aa	Predicted RBP	13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	BUD31	P41223	144 aa	Predicted RBP	13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	CCT5	P48643	541 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	ARFIP1	P53367	373 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	PRKAA2	P54646	552 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	TNFRSF17	Q02223	184 aa		13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	SRSF11	Q05519	484 aa	Known RBP	13.2	□□□□□ -0.3
CCHCR1-222	ENST00000507459	ELOA	Q14241	798 aa	Known RBP	13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms