RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZNF763Q0D2J5 394 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF658BQ4V348 819 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 SZRD1Q7Z422 152 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 TSPYL5Q86VY4 417 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 NLRP8Q86W28 1048 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 RNF130Q86XS8 419 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 LGI4Q8N135 537 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 OR9A1PQ8NGU1 263 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 SLC23A2Q9UGH3 650 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 TMA7Q9Y2S6 64 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 KNL1Q8NG31 2342 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 TRPM6Q9BX84 2022 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 KIAA1549LQ6ZVL6 1849 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 PRAMEF25A6NGN4 478 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 AGAP5A6NIR3 686 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 HEPACAM2A8MVW5 462 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 M0QX08 132 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 LATO43561 262 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 C9P02748 559 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 FHP07954 510 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 C1GALT1C1LP0DN25 315 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 ASMTP46597 345 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 RACK1P63244 317 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 PPIGQ13427 754 aaKnown RBP eCLIP15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 NXNL2Q5VZ03 156 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 ERICH5Q6P6B1 374 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 REEP4Q9H6H4 257 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 FBXO8Q9NRD0 319 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 RAB23Q9ULC3 237 aa15.78■□□□□ 0.12
CCDC88B-210ENST00000494566 SCAMP1O15126 338 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 ASNA1O43681 348 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 IL3P08700 152 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 ADORA3P0DMS8 318 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 ADRB3P13945 408 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 JUNDP17535 347 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 ITGA1P56199 1179 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 SLC5A12Q1EHB4 618 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 LRIT3Q3SXY7 679 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 GDPD3Q7L5L3 318 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 WDR53Q7Z5U6 358 aaPredicted RBP15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF605Q86T29 641 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 C16orf78Q8WTQ4 265 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 PHF10Q8WUB8 498 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 SLC5A11Q8WWX8 675 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 COQ8BQ96D53 544 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 LGR4Q9BXB1 951 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 SAGE1Q9NXZ1 904 aa15.77■□□□□ 0.12
CCDC88B-210ENST00000494566 A0A0G2JN53 185 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 FEZF1A0PJY2 475 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 KIAA0513O60268 411 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 CCNKO75909 580 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 PTNP21246 168 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 ACVR2AP27037 513 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 PIK3CBP42338 1070 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 KEAP1Q14145 624 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF234Q14588 700 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 RPS26P11Q5JNZ5 115 aaPredicted RBP15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 ADGRD2Q7Z7M1 963 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 B3GNT7Q8NFL0 401 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 PPCDCQ96CD2 204 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 CEP19Q96LK0 163 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 MAGEB10Q96LZ2 347 aaPredicted RBP15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 RMI1Q9H9A7 625 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 BTNL2Q9UIR0 455 aa15.77■□□□□ 0.11
CCDC88B-210ENST00000494566 METTL15A6NJ78 407 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 ZNF197O14709 1029 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 PCCBP05166 539 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 CHI3L1P36222 383 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 PROX2Q3B8N5 592 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 DEPDC1Q5TB30 811 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 C11orf65Q8NCR3 313 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 C7orf57Q8NEG2 295 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 NECTIN4Q96NY8 510 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 ZDHHC5Q9C0B5 715 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 NDEL1Q9GZM8 345 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 GABARAPL1Q9H0R8 117 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 TIGARQ9NQ88 270 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 ADPRHL2Q9NX46 363 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 DNAJC27Q9NZQ0 273 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 NDUFAF4Q9P032 175 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 GRXCR1A8MXD5 290 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 PRNPP04156 253 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 SRPRAP08240 638 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 FURINP09958 794 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 HSD3B1P14060 373 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 HSD3B2P26439 372 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 SSTR4P31391 388 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 ALDH9A1P49189 494 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 PRIM2P49643 509 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 PNLIPRP1P54315 467 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 RAB15P59190 212 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 PAQR6Q6TCH4 344 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 VN1R5Q7Z5H4 357 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 WDR36Q8NI36 951 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 FAM129BQ96TA1 746 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 RAD9AQ99638 391 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 FAM83CQ9BQN1 747 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 NUAK2Q9H093 628 aa15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 CCDC177Q9NQR7 707 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-210ENST00000494566 CUEDC1Q9NWM3 386 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms