RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SIGLEC12Q96PQ1 595 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 NTMT1Q9BV86 223 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 ZNF717Q9BY31 904 aaPredicted RBP23.06■■□□□ 1.28
UPF3A-209ENST00000492270 ANKZF1Q9H8Y5 726 aa23.06■■□□□ 1.28
UPF3A-209ENST00000492270 GABRR3A8MPY1 467 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 PPP6CO00743 305 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 PRAMEF2O60811 474 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 CPN2P22792 545 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 TNFRSF8P28908 595 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 PHEXP78562 749 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 ID2Q02363 134 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 SRSF11Q05519 484 aaKnown RBP23.05■■□□□ 1.28
UPF3A-209ENST00000492270 SLAMF1Q13291 335 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 RCN2Q14257 317 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 FAM180AQ6UWF9 173 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 RPS19BP1Q86WX3 136 aaKnown RBP23.05■■□□□ 1.28
UPF3A-209ENST00000492270 B3GNT7Q8NFL0 401 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 PRR7Q8TB68 274 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 ZNF483Q8TF39 744 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-209ENST00000492270 FAR1Q8WVX9 515 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 HES7Q9BYE0 225 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 ABI3Q9P2A4 366 aa23.05■■□□□ 1.28
UPF3A-209ENST00000492270 ZNF223Q9UK11 482 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-209ENST00000492270 UTP20O75691 2785 aaKnown RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 TRBV11-1A0A0K0K1C0 115 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 ANKUB1A6NFN9 424 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 CTNSO60931 367 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 EEDO75530 441 aaKnown RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 PYGBP11216 843 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 PTX3P26022 381 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 TPP2P29144 1249 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 CD96P40200 585 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 CDH13P55290 713 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 HNRNPH2P55795 449 aaKnown RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 TERF2Q15554 542 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 ZNF468Q5VIY5 522 aaPredicted RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 MDS2Q8NDY4 140 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 OR4F6Q8NGB9 312 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 SUN3Q8TAQ9 357 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 NCLNQ969V3 563 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 UTP23Q9BRU9 249 aaKnown RBP23.04■■□□□ 1.28
UPF3A-209ENST00000492270 ADAP2Q9NPF8 381 aa23.04■■□□□ 1.28
UPF3A-209ENST00000492270 A0A1W2PPM1 405 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 SEMA7AO75326 666 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 PRKRAO75569 313 aaKnown RBP23.03■■□□□ 1.28
UPF3A-209ENST00000492270 BSGP35613 385 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 SLCO1A2P46721 670 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 PMP22Q01453 160 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 STX4Q12846 297 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 ZNF766Q5HY98 468 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 FHL5Q5TD97 284 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 LGI4Q8N135 537 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 THAP3Q8WTV1 239 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-209ENST00000492270 ANKRD9Q96BM1 317 aaPredicted RBP23.03■■□□□ 1.28
UPF3A-209ENST00000492270 CENPKQ9BS16 269 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 C1QTNF3Q9BXJ4 246 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 ALOXE3Q9BYJ1 711 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 DEFB126Q9BYW3 111 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 PPIEQ9UNP9 301 aaKnown RBP23.03■■□□□ 1.28
UPF3A-209ENST00000492270 SPACA6W5XKT8 324 aa23.03■■□□□ 1.28
UPF3A-209ENST00000492270 FOXE1O00358 373 aaPredicted RBP23.02■■□□□ 1.28
UPF3A-209ENST00000492270 TMPRSS11DO60235 418 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 FGF17O60258 216 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 DLX3O60479 287 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 IFNA16P05015 189 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 CLCN2P51788 898 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 GPR143P51810 404 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 CUL3Q13618 768 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 OR1C1Q15619 314 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 ELAVL1Q15717 326 aaKnown RBP23.02■■□□□ 1.28
UPF3A-209ENST00000492270 INAQ16352 499 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 FRG2Q64ET8 278 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 C18orf63Q68DL7 685 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 TTC19Q6DKK2 380 aaPredicted RBP23.02■■□□□ 1.28
UPF3A-209ENST00000492270 SPINK14Q6IE38 97 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 LETMD1Q6P1Q0 360 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 MILR1Q7Z6M3 343 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 OR4N5Q8IXE1 308 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 ZCCHC7Q8N3Z6 543 aaKnown RBP23.02■■□□□ 1.28
UPF3A-209ENST00000492270 BCORP1Q8N888 145 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 ST6GALNAC3Q8NDV1 305 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 ACMSDQ8TDX5 336 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 TMEM237Q96Q45 408 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 FRG2BQ96QU4 278 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 SLX1AQ9BQ83 275 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 CCDC77Q9BR77 488 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 OLAHQ9NV23 265 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 ZNF225Q9UK10 706 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 ATG4BQ9Y4P1 393 aa23.02■■□□□ 1.28
UPF3A-209ENST00000492270 A0A0A6YYD5 115 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 SMIM23A6NLE4 172 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 PRKNO60260 465 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-209ENST00000492270 TAC1P20366 129 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 MLF1P58340 268 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 HERVK_113P63132 956 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 TNFRSF17Q02223 184 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 OC90Q02509 493 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-209ENST00000492270 GGTA1PQ4G0N0 100 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 UNC50Q53HI1 259 aa23.01■■□□□ 1.27
UPF3A-209ENST00000492270 ZNF324BQ6AW86 544 aaPredicted RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms