RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 AP2B1P63010 937 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF33BQ06732 778 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SLC13A2Q13183 592 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MRM1Q6IN84 353 aaKnown RBP15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CYP20A1Q6UW02 462 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 RIPOR1Q6ZS17 1223 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 METTL4Q8N3J2 472 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SREK1Q8WXA9 508 aaKnown RBP15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 IMMP1LQ96LU5 166 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KCNA7Q96RP8 456 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HBEGFQ99075 208 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LPAR4Q99677 370 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TRMOQ9BU70 441 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 STMN4Q9H169 189 aaPredicted RBP15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NMRK1Q9NWW6 199 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ADAM29Q9UKF5 820 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TIMM22Q9Y584 194 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MED13Q9UHV7 2174 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SYNDIG1LA6NDD5 238 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 GOLGA6L10A6NI86 522 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TMPRSS11DO60235 418 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CRCPO75575 148 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CELA2AP08217 269 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FAM58BPP0C7Q3 252 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 BUD31P41223 144 aaPredicted RBP15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ETV4P43268 484 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FOXA1P55317 472 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HNRNPH2P55795 449 aaKnown RBP15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TNFRSF17Q02223 184 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CASP8Q14790 479 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 EXT1Q16394 746 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 BTBD16Q32M84 506 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PLAG1Q6DJT9 500 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PAGE2Q7Z2X7 111 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CLNKQ7Z7G1 428 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 GPR180Q86V85 440 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PTRH1Q86Y79 214 aaKnown RBP15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HPS6Q86YV9 775 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CNDP1Q96KN2 507 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SHCBP1LQ9BZQ2 653 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 C5AR2Q9P296 337 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 VPS29Q9UBQ0 182 aa15.27■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ARHGAP10A1A4S6 786 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 SAGE2PA6NJ88 616 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TGFBR3LH3BV60 316 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TM9SF1O15321 606 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 NPHS1O60500 1241 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 CTNSO60931 367 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 GBAP04062 536 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 KLK1P06870 262 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 BPGMP07738 259 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TLX1P31314 330 aaPredicted RBP15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 SLC26A5P58743 744 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 C19orf57Q0VDD7 668 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TBL3Q12788 808 aaKnown RBP15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 AGAP7PQ5VUJ5 663 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 JMJD6Q6NYC1 403 aaPredicted RBP15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 COMMD6Q7Z4G1 85 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 CUZD1Q86UP6 607 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 GBP7Q8N8V2 638 aaPredicted RBP15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 M1APQ8TC57 530 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 BRIX1Q8TDN6 353 aaKnown RBP15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 AGAP4Q96P64 663 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ACPTQ9BZG2 426 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TNFRSF12AQ9NP84 129 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ARGLU1Q9NWB6 273 aaPredicted RBP15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ATG4BQ9Y4P1 393 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ASB4Q9Y574 426 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 CLDN16Q9Y5I7 305 aa15.26■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 SERTM1A2A2V5 107 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 PROM1O43490 865 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 DPM1O60762 260 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ZWINTO95229 277 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 UQCRHP07919 91 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 NR2F6P10588 404 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 UROSP10746 265 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ITGAMP11215 1152 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 CHN1P15882 459 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TPP2P29144 1249 aaPredicted RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 SERPINB4P48594 390 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 GALNT1Q10472 559 aaPredicted RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 STX4Q12846 297 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 KLRB1Q12918 225 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 C18orf63Q68DL7 685 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 ZCCHC23Q6ZST2 131 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 C1orf52Q8N6N3 182 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TM9SF4Q92544 642 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 RPF2Q9H7B2 306 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TMBIM4Q9HC24 238 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 MMP25Q9NPA2 562 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 KCNK9Q9NPC2 374 aa15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 PNO1Q9NRX1 252 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 HEMK1Q9Y5R4 338 aaPredicted RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 TNRC6AQ8NDV7 1962 aaKnown RBP15.25■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 SCN2AQ99250 2005 aa15.24■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 A0A1W2PR48 441 aa15.24■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 A8MUA0 341 aa15.24■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 B8ZZF3 427 aa15.24■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 LDB3O75112 727 aa15.24■□□□□ 0.03
MSH5-SAPCD1-206ENST00000491552 PRKRAO75569 313 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms