RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 TIAL1Q01085 375 aaKnown RBP eCLIP12.64□□□□□ -0.39
HMGN1-216ENST00000486741 NNATQ16517 81 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 SLC5A12Q1EHB4 618 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 KIAA1161Q6NSJ0 714 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 USP30Q70CQ3 517 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 TRIM46Q7Z4K8 759 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 KLHDC8AQ8IYD2 350 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 TMEM19Q96HH6 336 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 HCN4Q9Y3Q4 1203 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 PLEKHM1Q9Y4G2 1056 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 ANHXE9PGG2 379 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 C5AR1P21730 350 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 TXNL4AP83876 142 aaKnown RBP12.64□□□□□ -0.39
HMGN1-216ENST00000486741 MYBPC3Q14896 1274 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 NDUFAF5Q5TEU4 345 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 DCP2Q8IU60 420 aaKnown RBP12.64□□□□□ -0.39
HMGN1-216ENST00000486741 PEX5LQ8IYB4 626 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 CAMK1GQ96NX5 476 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 TPSD1Q9BZJ3 242 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 POLR2J2Q9GZM3 115 aaKnown RBP12.64□□□□□ -0.39
HMGN1-216ENST00000486741 IL21RQ9HBE5 538 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 SCN10AQ9Y5Y9 1956 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 KIAA0355O15063 1070 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 FRS3O43559 492 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 IL1RNP18510 177 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 UQCRC2P22695 453 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 HLCSP50747 726 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 SMN1Q16637 294 aaKnown RBP12.64□□□□□ -0.39
HMGN1-216ENST00000486741 WSCD2Q2TBF2 565 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 CDKL4Q5MAI5 379 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 GOLM1Q8NBJ4 401 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 GRHL3Q8TE85 626 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 OMA1Q96E52 524 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 FCRL4Q96PJ5 515 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 OR51I1Q9H343 314 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 POLMQ9NP87 494 aaPredicted RBP12.64□□□□□ -0.39
HMGN1-216ENST00000486741 PPT2Q9UMR5 302 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 CLEC4AQ9UMR7 237 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 SSR3Q9UNL2 185 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 POFUT2Q9Y2G5 429 aa12.64□□□□□ -0.39
HMGN1-216ENST00000486741 A0A1B0GVG6 124 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 GTPBP1O00178 669 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 SLC1A7O00341 560 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 RETP07949 1114 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 IRF4Q15306 451 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 HENMT1Q5T8I9 393 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TMEM215Q68D42 235 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 UBE2J2Q8N2K1 259 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 RASSF5Q8WWW0 418 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 HDAC2Q92769 488 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 GAL3ST4Q96RP7 486 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 NAA50Q9GZZ1 169 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 LMAN2LQ9H0V9 348 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MRPS33Q9Y291 106 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 HEBP2Q9Y5Z4 205 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 PTPRFP10586 1907 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MYOFQ9NZM1 2061 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 H0YJX3 145 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TLR4O00206 839 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TFECO14948 347 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 ARHGEF9O43307 516 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MFN2O95140 757 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 CKMT1AP12532 417 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TCEA1P23193 301 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 SHMT2P34897 504 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 PBX2P40425 430 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 VLDLRP98155 873 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 DEFB110Q30KQ9 67 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 OLIG3Q7RTU3 272 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 AMIGO1Q86WK6 493 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 CHCHD4Q8N4Q1 142 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 OR2L2Q8NH16 312 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 SETD7Q8WTS6 366 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 CAPSLQ8WWF8 208 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 VMP1Q96GC9 406 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MCCC1Q96RQ3 725 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 GPR174Q9BXC1 333 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 YTHDF1Q9BYJ9 559 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 OLAHQ9NV23 265 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 ABCD2Q9UBJ2 740 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MICAL3Q7RTP6 2002 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TRIOBPQ9H2D6 2365 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 PRG2P13727 222 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 PSMA1P25786 263 aaKnown RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 ZNF846Q147U1 533 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 RSBN1Q5VWQ0 802 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 SLCO4C1Q6ZQN7 724 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TSTD1Q8NFU3 115 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 OR5P2Q8WZ92 322 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 SLC22A18Q96BI1 424 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 CPPED1Q9BRF8 314 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-216ENST00000486741 HDHD2Q9H0R4 259 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 EHD1Q9H4M9 534 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 TBC1D17Q9HA65 648 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 DZANK1Q9NVP4 752 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MS4A12Q9NXJ0 267 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 IL20RAQ9UHF4 553 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 MKLN1Q9UL63 735 aa12.63□□□□□ -0.39
HMGN1-216ENST00000486741 GSTK1Q9Y2Q3 226 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms