RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 AGAP4Q96P64 663 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 LPAR4Q99677 370 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 ZNF717Q9BY31 904 aaPredicted RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 MRPL1Q9BYD6 325 aaKnown RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 SLC29A3Q9BZD2 475 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 SHCBP1LQ9BZQ2 653 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 ZBTB20Q9HC78 741 aaPredicted RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 LYRM4Q9HD34 91 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 RRAGDQ9NQL2 400 aaPredicted RBP13.85□□□□□ -0.19
USP4-212ENST00000486549 KCMF1Q9P0J7 381 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 PTGFRNQ9P2B2 879 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 MMACHCQ9Y4U1 282 aa13.85□□□□□ -0.19
USP4-212ENST00000486549 IGKV3D-11A0A0A0MRZ8 115 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 TCRBV16S1A1N1A0A5B0 115 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 CCDC151A5D8V7 595 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 TGFBR3LH3BV60 316 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 UBFD1O14562 309 aaKnown RBP13.84□□□□□ -0.19
USP4-212ENST00000486549 DPM1O60762 260 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 CRCPO75575 148 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 SEMA3DO95025 777 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 ESRRBO95718 433 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 KRT6AP02538 564 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 KRT6BP04259 564 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 KRT6CP48668 564 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 HTR6P50406 440 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 HNRNPH2P55795 449 aaKnown RBP13.84□□□□□ -0.19
USP4-212ENST00000486549 HSD17B7P56937 341 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 ID2Q02363 134 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 NADK2Q4G0N4 442 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 LINC00696Q6ZRV3 163 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 SCUBE1Q8IWY4 988 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 IQCKQ8N0W5 287 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 ZCCHC7Q8N3Z6 543 aaKnown RBP13.84□□□□□ -0.19
USP4-212ENST00000486549 MYRIPQ8NFW9 859 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 MECRQ9BV79 373 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 PNO1Q9NRX1 252 aaKnown RBP13.84□□□□□ -0.19
USP4-212ENST00000486549 PSD3Q9NYI0 1048 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 SENP1Q9P0U3 644 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 LUZP4Q9P127 313 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 C5AR2Q9P296 337 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 PHF11Q9UIL8 331 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 PPT2Q9UMR5 302 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 TIMM22Q9Y584 194 aa13.84□□□□□ -0.19
USP4-212ENST00000486549 A0A0A6YYD5 115 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 TMPRSS11DO60235 418 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 LDB3O75112 727 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 ULK1O75385 1050 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 PRKRAO75569 313 aaKnown RBP13.83□□□□□ -0.2
USP4-212ENST00000486549 ENO1P06733 434 aaKnown RBP13.83□□□□□ -0.2
USP4-212ENST00000486549 ICAM2P13598 275 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 PPP2R1BP30154 601 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 ALDH3A1P30838 453 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 CD97P48960 835 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 ARFIP1P53367 373 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 FOXA1P55317 472 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 NAA20P61599 178 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 AP2B1P63010 937 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 STX4Q12846 297 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 EXT1Q16394 746 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 B3GNTL1Q67FW5 361 aaPredicted RBP13.83□□□□□ -0.2
USP4-212ENST00000486549 C18orf63Q68DL7 685 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 PLAG1Q6DJT9 500 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 SCIMPQ6UWF3 145 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 LRIG3Q6UXM1 1119 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 RIPOR1Q6ZS17 1223 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 GPR180Q86V85 440 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 TM9SF4Q92544 642 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 GATA5Q9BWX5 397 aaPredicted RBP13.83□□□□□ -0.2
USP4-212ENST00000486549 EPS8L2Q9H6S3 715 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 DDX31Q9H8H2 851 aaKnown RBP13.83□□□□□ -0.2
USP4-212ENST00000486549 BRF2Q9HAW0 419 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 KCNK13Q9HB14 408 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 LYARQ9NX58 379 aaKnown RBP13.83□□□□□ -0.2
USP4-212ENST00000486549 AHSPQ9NZD4 102 aa13.83□□□□□ -0.2
USP4-212ENST00000486549 CPAMD8Q8IZJ3 1885 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 ARHGAP10A1A4S6 786 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 SAGE2PA6NJ88 616 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 A8MUI8 341 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 TYROBPO43914 113 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 TRIM13O60858 407 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 CTNSO60931 367 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 MYO1DO94832 1006 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 IFNA16P05015 189 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 KLK1P06870 262 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 FAM58BPP0C7Q3 252 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 CHN1P15882 459 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 BUD31P41223 144 aaPredicted RBP13.82□□□□□ -0.2
USP4-212ENST00000486549 SLC26A5P58743 744 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 TNFRSF17Q02223 184 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 ASPHQ12797 758 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 CRB2Q5IJ48 1285 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 BEND6Q5SZJ8 279 aaPredicted RBP13.82□□□□□ -0.2
USP4-212ENST00000486549 FCRLBQ6BAA4 426 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 JMJD6Q6NYC1 403 aaPredicted RBP13.82□□□□□ -0.2
USP4-212ENST00000486549 ISLR2Q6UXK2 745 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 PAGE2Q7Z2X7 111 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 COMMD6Q7Z4G1 85 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 CROCCP2Q86T23 111 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 EXOC3L1Q86VI1 746 aa13.82□□□□□ -0.2
USP4-212ENST00000486549 OR4N5Q8IXE1 308 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms