RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 AKTIPQ9H8T0 292 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 ZFP69BQ9UJL9 534 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 CCL27Q9Y4X3 112 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 PTGDR2Q9Y5Y4 395 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 BSNQ9UPA5 3926 aa16.1■□□□□ 0.17
VIM-205ENST00000485947 ATP6AP2A0A1C7CYW4 349 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 CCT8L1PA6NM43 557 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 H7BY64 318 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 LSM1O15116 133 aaKnown RBP16.09■□□□□ 0.17
VIM-205ENST00000485947 UBDO15205 165 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 SLC22A2O15244 555 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ATP6AP2O75787 350 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 PDGFAP04085 211 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 EIF2S1P05198 315 aaKnown RBP16.09■□□□□ 0.17
VIM-205ENST00000485947 CYC1P08574 325 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 PCNAP12004 261 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 PCSK2P16519 638 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ADSLP30566 484 aaPredicted RBP16.09■□□□□ 0.17
VIM-205ENST00000485947 ATP4BP51164 291 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 RPS15AP62244 130 aaKnown RBP16.09■□□□□ 0.17
VIM-205ENST00000485947 ERVK-8P63133 956 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 CHAF1BQ13112 559 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 DSG2Q14126 1118 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ZSCAN26Q16670 478 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 FAM69BQ5VUD6 431 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 FAM219BQ5XKK7 198 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 SCIMPQ6UWF3 145 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 COX15Q7KZN9 410 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ADCK2Q7Z695 626 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ATCAYQ86WG3 371 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 GALNT16Q8N428 558 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 OR2T11Q8NH01 316 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ERP27Q96DN0 273 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 PRAP1Q96NZ9 151 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 ACPTQ9BZG2 426 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 TRIM4Q9C037 500 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 NMUR2Q9GZQ4 415 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 SPNS1Q9H2V7 528 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 RHBGQ9H310 441 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 SAR1AQ9NR31 198 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 FARSBQ9NSD9 589 aaKnown RBP16.09■□□□□ 0.17
VIM-205ENST00000485947 C14orf105Q9NVL8 296 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 NMRK1Q9NWW6 199 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 FER1L5A0AVI2 2057 aa16.09■□□□□ 0.17
VIM-205ENST00000485947 MYO9AB2RTY4 2548 aa16.08■□□□□ 0.17
VIM-205ENST00000485947 LRRK2Q5S007 2527 aa16.08■□□□□ 0.17
VIM-205ENST00000485947 ANKDD1BA6NHY2 528 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 ACPPP15309 386 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 NCF2P19878 526 aaPredicted RBP16.08■□□□□ 0.16
VIM-205ENST00000485947 OR1D4P47884 311 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 GSTA3Q16772 222 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 SGO1Q5FBB7 561 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 C6orf136Q5SQH8 315 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 CLNKQ7Z7G1 428 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 CPSF7Q8N684 471 aaKnown RBP16.08■□□□□ 0.16
VIM-205ENST00000485947 FITM2Q8N6M3 262 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 HUS1BQ8NHY5 278 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 STT3BQ8TCJ2 826 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 PNPLA2Q96AD5 504 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 MIB2Q96AX9 1013 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 MIEF2Q96C03 454 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 MTFMTQ96DP5 389 aaKnown RBP16.08■□□□□ 0.16
VIM-205ENST00000485947 CMTM7Q96FZ5 175 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 C10orf90Q96M02 699 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 NUDT9Q9BW91 350 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 TGIF2Q9GZN2 237 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 ZNF385DQ9H6B1 395 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 MKKSQ9NPJ1 570 aaPredicted RBP16.08■□□□□ 0.16
VIM-205ENST00000485947 C1orf109Q9NX04 203 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 TMED5Q9Y3A6 229 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 NOTCH2Q04721 2471 aa16.08■□□□□ 0.16
VIM-205ENST00000485947 PEX11AO75192 247 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 ZGLP1P0C6A0 271 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 FBLP22087 321 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 AHRP35869 848 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 SCTRP47872 440 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 MRPL19P49406 292 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 NEK2P51955 445 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 YBX1P67809 324 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 MEF2AQ02078 507 aaPredicted RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 EMX2Q04743 252 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 DDX39BQ13838 428 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 SQLEQ14534 574 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 RBBP5Q15291 538 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 AP5B1Q2VPB7 878 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 IRAK1BP1Q5VVH5 260 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 ARHGEF39Q8N4T4 335 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 FNDC5Q8NAU1 212 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 HBEGFQ99075 208 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 MTERF1Q99551 399 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 SERPINI1Q99574 410 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 LRTM1Q9HBL6 345 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 DMRT3Q9NQL9 472 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 ASIC5Q9NY37 505 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 VPS29Q9UBQ0 182 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 CTSFQ9UBX1 484 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 RUVBL1Q9Y265 456 aaKnown RBP16.07■□□□□ 0.16
VIM-205ENST00000485947 MAP4K5Q9Y4K4 846 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 HS3ST3B1Q9Y662 390 aa16.07■□□□□ 0.16
VIM-205ENST00000485947 MED13Q9UHV7 2174 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms