RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 JRKO75564 520 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 LRATO95237 230 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 AIFM1O95831 613 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 ALBP02768 609 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 FHP07954 510 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 NR2F6P10588 404 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 DRD2P14416 443 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 IDO1P14902 403 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 TCN2P20062 427 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 IL10P22301 178 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 ALDH9A1P49189 494 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 NME5P56597 212 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 CBX1P83916 185 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 MC1RQ01726 317 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 TNFRSF17Q02223 184 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 KLC1Q07866 573 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 PTGR1Q14914 329 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 HEPACAMQ14CZ8 416 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 VWA2Q5GFL6 755 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 NDUFAF5Q5TEU4 345 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 GKAP1Q5VSY0 366 aaPredicted RBP11.54□□□□□ -0.56
SDC1-206ENST00000482879 FAM71E1Q6IPT2 247 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 ZNF517Q6ZMY9 492 aaPredicted RBP11.54□□□□□ -0.56
SDC1-206ENST00000482879 IKBIPQ70UQ0 350 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 PRSS58Q8IYP2 241 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 CACNA2D3Q8IZS8 1091 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 FAM9CQ8IZT9 166 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 MMP21Q8N119 569 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.54□□□□□ -0.56
SDC1-206ENST00000482879 STT3BQ8TCJ2 826 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 BCAS4Q8TDM0 211 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 ADAMTS18Q8TE60 1221 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 UCN3Q969E3 161 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 GFM2Q969S9 779 aaKnown RBP11.54□□□□□ -0.56
SDC1-206ENST00000482879 FKBP10Q96AY3 582 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 MIEF2Q96C03 454 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 OR1F2PQ96R84 312 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 CSF3RQ99062 836 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 DPY30Q9C005 99 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 HEY2Q9UBP5 337 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 CTSFQ9UBX1 484 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 ACSL6Q9UKU0 697 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 MRPS33Q9Y291 106 aaKnown RBP11.54□□□□□ -0.56
SDC1-206ENST00000482879 ARL2BPQ9Y2Y0 163 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 PCDHA9Q9Y5H5 950 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 GPR45Q9Y5Y3 372 aa11.54□□□□□ -0.56
SDC1-206ENST00000482879 IGLV3-12A0A075B6K2 115 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 C1orf226A1L170 272 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 GLOD5A6NK44 160 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 CLDN4O14493 209 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 NDUFAB1O14561 156 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 PGRMC2O15173 223 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 PRKRAO75569 313 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 CDC123O75794 336 aaPredicted RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 BMP10O95393 424 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 ZGLP1P0C6A0 271 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 PCSK2P16519 638 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 JAK1P23458 1154 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 HNRNPFP52597 415 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 CLDN8P56748 225 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 STX1BP61266 288 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 UFM1P61960 85 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 NCF4Q15080 339 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 NKG7Q16617 165 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 TBC1D25Q3MII6 688 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 PDCD4Q53EL6 469 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 MFSD4BQ5TF39 518 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 MRPL14Q6P1L8 145 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 FAM198BQ6UWH4 519 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 CLNKQ7Z7G1 428 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 ZC3H7AQ8IWR0 971 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 MIER2Q8N344 545 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 KRTCAP2Q8N6L1 136 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 TMEM52Q8NDY8 209 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 CT55Q8WUE5 264 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 BRINP2Q9C0B6 783 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 TGIF2Q9GZN2 237 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 SLC26A1Q9H2B4 701 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 RPF2Q9H7B2 306 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 PRTFDC1Q9NRG1 225 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 C14orf105Q9NVL8 296 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 COPG1Q9Y678 874 aaKnown RBP11.53□□□□□ -0.56
SDC1-206ENST00000482879 ACACAQ13085 2346 aa11.53□□□□□ -0.56
SDC1-206ENST00000482879 BLACEA4D250 179 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 OR2W5A6NFC9 320 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 VSTM2BA6NLU5 285 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 WASHC1A8K0Z3 465 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 PRMT3O60678 531 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 CNOT3O75175 753 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 CD63P08962 238 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 RAB40ALP0C0E4 278 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 DDCP20711 480 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 PRPS1L1P21108 318 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 HPCAL1P37235 193 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 STAT5AP42229 794 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 ATP4BP51164 291 aa11.52□□□□□ -0.57
SDC1-206ENST00000482879 RPS15P62841 145 aaKnown RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 IRX1P78414 480 aaPredicted RBP11.52□□□□□ -0.57
SDC1-206ENST00000482879 ACTN3Q08043 901 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms