RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TFECO14948 347 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CLGNO14967 610 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR2J2O76002 312 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GLSO94925 669 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TUBB4AP04350 444 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ATP5A1P25705 553 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SSTR2P30874 369 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RFC3P40938 356 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HK2P52789 917 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 KRTAP10-9P60411 292 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GPR85P60893 370 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IGLV3-21P80748 117 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 DLG1Q12959 904 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SLC13A2Q13183 592 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TESK1Q15569 626 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PDK4Q16654 411 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 EID3Q8N140 333 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF321PQ8N8H1 164 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FAM47BQ8NA70 645 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 BBOF1Q8ND07 529 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ANKRD9Q96BM1 317 aaPredicted RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TSPAN17Q96FV3 270 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RASL10BQ96S79 203 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TBCDQ9BTW9 1192 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 EFCAB11Q9BUY7 163 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ALOXE3Q9BYJ1 711 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CD244Q9BZW8 370 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PHACTR1Q9C0D0 580 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LIN28AQ9H9Z2 209 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TIMMDC1Q9NPL8 285 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 WWOXQ9NZC7 414 aa11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MRPS33Q9Y291 106 aaKnown RBP11.37□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FAM187AA6NFU0 413 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR6B1O95007 311 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IGHG3P01860 377 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GSTA2P09210 222 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SLC35E2BP0CK96 405 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MTHFD2P13995 350 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 STMN1P16949 149 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GMPRP36959 345 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GP5P40197 560 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SOX3P41225 446 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PAFAH1B1P43034 410 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SLC12A2P55011 1212 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RAB10P61026 200 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MRPS25P82663 173 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 FOXO1Q12778 655 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CHIT1Q13231 466 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LAPTM5Q13571 262 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RCN2Q14257 317 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HYAL4Q2M3T9 481 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ARHGAP11AQ6P4F7 1023 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HSDL2Q6YN16 418 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 C3orf62Q6ZUJ4 267 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CLNKQ7Z7G1 428 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CD163Q86VB7 1156 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ACOT4Q8N9L9 421 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SRFBP1Q8NEF9 429 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR2M7Q8NG81 312 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 OR14A16Q8NHC5 309 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LILRB4Q8NHJ6 448 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF721Q8TF20 911 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 UBTD2Q8WUN7 234 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CCT6BQ92526 530 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 DAZLQ92904 295 aaKnown RBP11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SDCCAG3Q96C92 435 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 KCNC2Q96PR1 638 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ATOH8Q96SQ7 321 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MAPKAP1Q9BPZ7 522 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CCDC77Q9BR77 488 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SH2D2AQ9NP31 389 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PPT2Q9UMR5 302 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TSC22D4Q9Y3Q8 395 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CLCA3PQ9Y6N3 262 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 NCKAP5O14513 1909 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SETD2Q9BYW2 2564 aaPredicted RBP11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MTORP42345 2549 aa11.36□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A0A0G2JMM0 328 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MYOCOSA0A1B0GUC4 107 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A0A1B0GVC2 190 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPB8 328 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A0A1W2PRS3 328 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 A8MVJ9 347 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 KIR3DP1A8MWS1 328 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RAD51CO43502 376 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 LDB3O75112 727 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TOXO94900 526 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ETHE1O95571 254 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 IGKV3-11P04433 115 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CAPN3P20807 821 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 CNR1P21554 472 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 HIST1H1TP22492 207 aaPredicted RBP11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 RNF4P78317 190 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 GUCY2DQ02846 1103 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 SERTAD2Q14140 314 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 MPEG1Q2M385 716 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 ZNF750Q32MQ0 723 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 TMEM35AQ53FP2 167 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 PAGE2BQ5JRK9 111 aa11.35□□□□□ -0.59
MSH5-SAPCD1-205ENST00000476085 DEPDC1Q5TB30 811 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms