RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 NSUN5Q96P11 429 aaKnown RBP16.75■□□□□ 0.27
UPF3A-203ENST00000474056 CDK15Q96Q40 435 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 DEFB126Q9BYW3 111 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 TXLNGYQ9BZA5 131 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 NOL11Q9H8H0 719 aaKnown RBP16.75■□□□□ 0.27
UPF3A-203ENST00000474056 ADAP2Q9NPF8 381 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 PCTPQ9UKL6 214 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 FBXW2Q9UKT8 454 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 TSC22D4Q9Y3Q8 395 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 CROCCQ5TZA2 2017 aa16.75■□□□□ 0.27
UPF3A-203ENST00000474056 TRBV11-1A0A0K0K1C0 115 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 H0YIV9 168 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 STX16-NPEPL1H3BU86 382 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 OR7A17O14581 309 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 STX16O14662 325 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 CTNSO60931 367 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 LDB3O75112 727 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 SMIM24O75264 130 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 SBK3P0C264 359 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 MYBL2P10244 700 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 TPP2P29144 1249 aaPredicted RBP16.74■□□□□ 0.27
UPF3A-203ENST00000474056 CLCN2P51788 898 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 GPR143P51810 404 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 RAP1GDS1P52306 607 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 OC90Q02509 493 aaPredicted RBP16.74■□□□□ 0.27
UPF3A-203ENST00000474056 OR4C11Q6IEV9 310 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 RPS27LQ71UM5 84 aaKnown RBP16.74■□□□□ 0.27
UPF3A-203ENST00000474056 WDR20Q8TBZ3 569 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 RGMAQ96B86 450 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 SCMH1Q96GD3 660 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 MRPL57Q9BQC6 102 aaKnown RBP16.74■□□□□ 0.27
UPF3A-203ENST00000474056 ALOXE3Q9BYJ1 711 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 MRPL46Q9H2W6 279 aaKnown RBP16.74■□□□□ 0.27
UPF3A-203ENST00000474056 EPB41L4BQ9H329 900 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 ZBTB26Q9HCK0 441 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 KLHL1Q9NR64 748 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 TMCO1Q9UM00 188 aa16.74■□□□□ 0.27
UPF3A-203ENST00000474056 PPIEQ9UNP9 301 aaKnown RBP16.74■□□□□ 0.27
UPF3A-203ENST00000474056 PRKNO60260 465 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-203ENST00000474056 NEURL1O76050 574 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 ETHE1O95571 254 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 IFNA16P05015 189 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 CPN2P22792 545 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 MST1P26927 711 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 ARL1P40616 181 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-203ENST00000474056 CCNG1P51959 295 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 PHEXP78562 749 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 TRAF3Q13114 568 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 ZRSR2Q15696 482 aaKnown RBP16.73■□□□□ 0.27
UPF3A-203ENST00000474056 TIFABQ6ZNK6 161 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 TMEM151AQ8N4L1 468 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 THAP3Q8WTV1 239 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-203ENST00000474056 ATP6V1E2Q96A05 226 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 REPS1Q96D71 796 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 VMP1Q96GC9 406 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 ZNF717Q9BY31 904 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-203ENST00000474056 LRFN1Q9P244 771 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 OSGIN2Q9Y236 505 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 SLC5A6Q9Y289 635 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 PCDHGB6Q9Y5F9 930 aa16.73■□□□□ 0.27
UPF3A-203ENST00000474056 A8MT66 165 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 CLDN9O95484 217 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 LDLRP01130 860 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 CRYABP02511 175 aaKnown RBP16.72■□□□□ 0.27
UPF3A-203ENST00000474056 RPS17P08708 135 aaKnown RBP16.72■□□□□ 0.27
UPF3A-203ENST00000474056 NEK2P51955 445 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 HNRNPH2P55795 449 aaKnown RBP16.72■□□□□ 0.27
UPF3A-203ENST00000474056 KCNK10P57789 538 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 ID2Q02363 134 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 STX4Q12846 297 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 SLAMF1Q13291 335 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 SLC29A2Q14542 456 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 ELAVL1Q15717 326 aaKnown RBP16.72■□□□□ 0.27
UPF3A-203ENST00000474056 LGSNQ5TDP6 509 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 GALNTL5Q7Z4T8 443 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 ZNF227Q86WZ6 799 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 ARMC10Q8N2F6 343 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 DNAJB8Q8NHS0 232 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 ANKRD9Q96BM1 317 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-203ENST00000474056 CENPKQ9BS16 269 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 NTMT1Q9BV86 223 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 SEMA4BQ9NPR2 832 aaPredicted RBP16.72■□□□□ 0.27
UPF3A-203ENST00000474056 VTI1BQ9UEU0 232 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 SPACA6W5XKT8 324 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 DOPEY1Q5JWR5 2465 aa16.72■□□□□ 0.27
UPF3A-203ENST00000474056 A0A1B0GTL3 188 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 SYNDIG1LA6NDD5 238 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 FCHO1O14526 889 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 FGF17O60258 216 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 PRKRAO75569 313 aaKnown RBP16.71■□□□□ 0.27
UPF3A-203ENST00000474056 WISP2O76076 250 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 GP1BBP13224 206 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 CD46P15529 392 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 PTX3P26022 381 aaPredicted RBP16.71■□□□□ 0.27
UPF3A-203ENST00000474056 BSGP35613 385 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 FAM219BQ5XKK7 198 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 OR4N5Q8IXE1 308 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 TMEM132CQ8N3T6 1108 aa16.71■□□□□ 0.27
UPF3A-203ENST00000474056 ZCCHC7Q8N3Z6 543 aaKnown RBP16.71■□□□□ 0.27
UPF3A-203ENST00000474056 TMEM178AQ8NBL3 297 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms