RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 TMEM35AQ53FP2 167 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 GRHL2Q6ISB3 625 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 C8orf74Q6P047 294 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 MED27Q6P2C8 311 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 FGD2Q7Z6J4 655 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 CYP4Z2PQ8N1L4 340 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 GHDCQ8N2G8 530 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 TMEM132CQ8N3T6 1108 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 PTPMT1Q8WUK0 201 aaPredicted RBP15.17■□□□□ 0.02
COL9A3-208ENST00000469802 KCTD4Q8WVF5 259 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 MARVELD3Q96A59 401 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 MAPKAP1Q9BPZ7 522 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 SNX15Q9NRS6 342 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 VTI1BQ9UEU0 232 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 FBXW2Q9UKT8 454 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 FBN2P35556 2912 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 CREBBPQ92793 2442 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 ZNF407Q9C0G0 2248 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 CSMD1Q96PZ7 3565 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 SYCE1LA8MT33 242 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 RTCAO00442 366 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 ZFAND5O76080 213 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 C2P06681 752 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 EPB42P16452 691 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 AGAP20933 346 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 GRNP28799 593 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 MEOX1P50221 254 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 SSR4P51571 173 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 IGLV3-21P80748 117 aaPredicted RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 HSF1Q00613 529 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 UBAP2Q5T6F2 1119 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 KHDRBS2Q5VWX1 349 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 MDGA2Q7Z553 956 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 RELL1Q8IUW5 271 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 SULF2Q8IWU5 870 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 ZFP62Q8NB50 900 aaPredicted RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 MORN4Q8NDC4 146 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 OR14A16Q8NHC5 309 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 C16orf52Q8NHV5 167 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 DAZLQ92904 295 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 GPR78Q96P69 363 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 CCDC77Q9BR77 488 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 LRRC1Q9BTT6 524 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 FUT8Q9BYC5 575 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 ACSS3Q9H6R3 686 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 MYOTQ9UBF9 498 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 YARS2Q9Y2Z4 477 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 MEMO1Q9Y316 297 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 PKDREJQ9NTG1 2253 aa15.16■□□□□ 0.02
COL9A3-208ENST00000469802 PHF3Q92576 2039 aaKnown RBP15.16■□□□□ 0.02
COL9A3-208ENST00000469802 EXPH5Q8NEV8 1989 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 DNAJC13O75165 2243 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 ARHGAP10A1A4S6 786 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 LDB3O75112 727 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 ALDOAP04075 364 aaKnown RBP15.15■□□□□ 0.02
COL9A3-208ENST00000469802 PCNAP12004 261 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 PRF1P14222 555 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 PTGER1P34995 402 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 PIK3CBP42338 1070 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 SERTAD2Q14140 314 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 ZNF630Q2M218 657 aaPredicted RBP15.15■□□□□ 0.02
COL9A3-208ENST00000469802 FAM83EQ2M2I3 478 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 DEPDC1Q5TB30 811 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 MROH9Q5TGP6 573 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 SP5Q6BEB4 398 aaPredicted RBP15.15■□□□□ 0.02
COL9A3-208ENST00000469802 XKRXQ6PP77 449 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 C16orf47Q6ZP98 133 aaPredicted RBP15.15■□□□□ 0.02
COL9A3-208ENST00000469802 GPALPP1Q8IXQ4 340 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 TMEM156Q8N614 296 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 OR8K3Q8NH51 312 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 HUS1BQ8NHY5 278 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 ANKRD9Q96BM1 317 aaPredicted RBP15.15■□□□□ 0.02
COL9A3-208ENST00000469802 CMTM7Q96FZ5 175 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 RASL10BQ96S79 203 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 ALOXE3Q9BYJ1 711 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 DMRT3Q9NQL9 472 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 PLSCR2Q9NRY7 297 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 NINJ2Q9NZG7 142 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 ADGRE2Q9UHX3 823 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 CLCA3PQ9Y6N3 262 aa15.15■□□□□ 0.02
COL9A3-208ENST00000469802 A0A096LPK6 155 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 KLRC4-KLRK1H3BQV0 150 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 ZNHIT1O43257 154 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 PEX1O43933 1283 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 OR2J2O76002 312 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 KLHL2O95198 593 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 TGFB1P01137 390 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 IFNA16P05015 189 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 SSR2P43308 183 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 MAGEA12P43365 314 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 SERPINB8P50452 374 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 HK2P52789 917 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 ARFIP1P53367 373 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 ALDH18A1P54886 795 aaKnown RBP15.14■□□□□ 0.01
COL9A3-208ENST00000469802 STX4Q12846 297 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 ACAP2Q15057 778 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 PCBP2Q15366 365 aaKnown RBP eCLIP15.14■□□□□ 0.01
COL9A3-208ENST00000469802 AP5B1Q2VPB7 878 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 CMPK2Q5EBM0 449 aa15.14■□□□□ 0.01
COL9A3-208ENST00000469802 HSDL2Q6YN16 418 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms