RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 EDARQ9UNE0 448 aa4.87□□□□□ -1.63
PTPN4-209ENST00000469511 TFR2Q9UP52 801 aa4.87□□□□□ -1.63
PTPN4-209ENST00000469511 GPR55Q9Y2T6 319 aaPredicted RBP4.87□□□□□ -1.63
PTPN4-209ENST00000469511 ZNF281Q9Y2X9 895 aa4.87□□□□□ -1.63
PTPN4-209ENST00000469511 CLDN16Q9Y5I7 305 aa4.87□□□□□ -1.63
PTPN4-209ENST00000469511 EXPH5Q8NEV8 1989 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TGP01266 2768 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SAGE2PA6NJ88 616 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 HACD1B0YJ81 288 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 C4orf51C9J302 202 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 E7ENX8 843 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 WWP2O00308 870 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 QSOX1O00391 747 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 AQP7O14520 342 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 BCKDKO14874 412 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 WDR1O75083 606 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 NIPSNAP2O75323 286 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 VPS26AO75436 327 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 OR2J2O76002 312 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 MATN4O95460 622 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 ESR1P03372 595 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TUBB4AP04350 444 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 RPN2P04844 631 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 APOA4P06727 396 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 FHP07954 510 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 CCL3P10147 92 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 RPA3P35244 121 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 PIGAP37287 484 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SOX3P41225 446 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TRPC1P48995 793 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 MAN2A2P49641 1150 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 PNLIPRP1P54315 467 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 MEF2AQ02078 507 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 PLOD1Q02809 727 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TAP2Q03519 686 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 FOXF2Q12947 444 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TNK1Q13470 666 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 GBX1Q14549 363 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 KCNJ11Q14654 390 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 NR1I3Q14994 352 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 NDUFA9Q16795 377 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 ASTE1Q2TB18 679 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 ACSBG2Q5FVE4 666 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 CTSL3PQ5NE16 218 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 ZNF662Q6ZS27 426 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 RBM43Q6ZSC3 357 aaKnown RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 BZW1Q7L1Q6 419 aaKnown RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 PCGF5Q86SE9 256 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 PRUNE1Q86TP1 453 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 LRRC75A-AS1Q8N1F1 130 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 FBXO15Q8NCQ5 510 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TMEM52Q8NDY8 209 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 OR52K1Q8NGK4 314 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 OR9A1PQ8NGU1 263 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 CREB3L4Q8TEY5 395 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 TMEM158Q8WZ71 300 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SMPDL3AQ92484 453 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 KRT35Q92764 455 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SYN2Q92777 582 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 RERGQ96A58 199 aaPredicted RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SCYL1Q96KG9 808 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 C19orf43Q9BQ61 176 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 YIPF4Q9BSR8 244 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 RAB11FIP5Q9BXF6 653 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 AICDAQ9GZX7 198 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 P2RY12Q9H244 342 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 PROK2Q9HC23 129 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SPTLC3Q9NUV7 552 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 SPATA7Q9P0W8 599 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 AAR2Q9Y312 384 aaKnown RBP4.86□□□□□ -1.63
PTPN4-209ENST00000469511 FREM1Q5H8C1 2179 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 ANK2Q01484 3957 aa4.86□□□□□ -1.63
PTPN4-209ENST00000469511 IGKV3D-11A0A0A0MRZ8 115 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 TRGV5A0A0B4J1U4 118 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 TCRBV16S1A1N1A0A5B0 115 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 OR14I1A6ND48 311 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 HSPB2A8KAH6 182 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 DEFB108AA8MXU0 73 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 MYO1CO00159 1063 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 FCHO1O14526 889 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 PSIP1O75475 530 aaKnown RBP4.85□□□□□ -1.63
PTPN4-209ENST00000469511 MYO1DO94832 1006 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 SOX30O94993 753 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 LRATO95237 230 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 SLC16A8O95907 504 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 EPPINO95925 133 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 CD3EP07766 207 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 TMEM253P0C7T8 217 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 RBP3P10745 1247 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 IFNGR1P15260 489 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 EZRP15311 586 aaKnown RBP4.85□□□□□ -1.63
PTPN4-209ENST00000469511 CNR1P21554 472 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 LOXP28300 417 aaPredicted RBP4.85□□□□□ -1.63
PTPN4-209ENST00000469511 SLCO1A2P46721 670 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 PTH2RP49190 550 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 HNRNPFP52597 415 aaKnown RBP4.85□□□□□ -1.63
PTPN4-209ENST00000469511 EIF3EP60228 445 aaKnown RBP4.85□□□□□ -1.63
PTPN4-209ENST00000469511 MPP1Q00013 466 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 TEKQ02763 1124 aa4.85□□□□□ -1.63
PTPN4-209ENST00000469511 RUNX1T1Q06455 604 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms