RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 LSMEM2Q8N112 164 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 MINDY1Q8N5J2 469 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ZNF781Q8N8C0 355 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 PDPRQ8NCN5 879 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 IL17RDQ8NFM7 739 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 OR4F6Q8NGB9 312 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 OR52B6Q8NGF0 335 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 RFWD2Q8NHY2 731 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 METTL6Q8TCB7 284 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SLC37A2Q8TED4 501 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ZNF483Q8TF39 744 aaPredicted RBP3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SMPDL3AQ92484 453 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 CCT6BQ92526 530 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 NCSTNQ92542 709 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 L3HYPDHQ96EM0 354 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 CHMP6Q96FZ7 201 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 PRR11Q96HE9 360 aaPredicted RBP3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 PRAP1Q96NZ9 151 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 KCNA7Q96RP8 456 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 CCT8L2Q96SF2 557 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ERVK-6Q9BXR3 956 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 DRC3Q9H069 523 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 NSRP1Q9H0G5 558 aaKnown RBP3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 GSTO2Q9H4Y5 243 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SLC32A1Q9H598 525 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SYNDIG1Q9H7V2 258 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ACTR8Q9H981 624 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ERVMER34-1Q9H9K5 563 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ZBTB26Q9HCK0 441 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SLC40A1Q9NP59 571 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 WASH6PQ9NQA3 447 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 CCDC177Q9NQR7 707 aaPredicted RBP3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 FBXO34Q9NWN3 711 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 HRASLS2Q9NWW9 162 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SPHK1Q9NYA1 384 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 JKAMPQ9P055 326 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 SPATA7Q9P0W8 599 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 LRIT1Q9P2V4 623 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 TAC3Q9UHF0 121 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 PCTPQ9UKL6 214 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 PADI4Q9UM07 663 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 ICKQ9UPZ9 632 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 KLHL20Q9Y2M5 609 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 RNF11Q9Y3C5 154 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 RAP2CQ9Y3L5 183 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 RNF215Q9Y6U7 377 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 PIKFYVEQ9Y2I7 2098 aa3.91□□□□□ -1.78
TMEM39A-204ENST00000468545 COL6A3P12111 3177 aa3.9□□□□□ -1.78
TMEM39A-204ENST00000468545 GOLGA8QA0A0J9YX86 632 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 FEZF1A0PJY2 475 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 PIPSLA2A3N6 862 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 GOLGA8OA6NCC3 632 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 A6NCN8 305 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 A8MU76 341 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 E7EQ34 232 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 LMO7DNF2Z398 122 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 FAM227AF5H4B4 570 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 GOLGA8NF8WBI6 632 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 F2RL2O00254 374 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 E2F3O00716 465 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 NDUFAB1O14561 156 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 KLF11O14901 512 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 AZIN1O14977 448 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 B3GALT2O43825 422 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 DFNA5O60443 496 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 EDF1O60869 148 aaKnown RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 DIAPH2O60879 1101 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 SNNO75324 88 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 SKAP2O75563 359 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CLDN9O95484 217 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 LDOC1O95751 146 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 MLYCDO95822 493 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 OTCP00480 354 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 STATHP02808 62 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 SERPIND1P05546 499 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 PROS1P07225 676 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CAPN1P07384 714 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 RETP07949 1114 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 RPS17P08708 135 aaKnown RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CHRM5P08912 532 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 LINC00032P0C843 101 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 C1GALT1C1LP0DN25 315 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 TROVE2P10155 538 aaKnown RBP eCLIP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CDH1P12830 882 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 HGFP14210 728 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 PVRP15151 417 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 NPPBP16860 134 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 EPHA8P29322 1005 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CMPK1P30085 196 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 PKLRP30613 574 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 APOBEC3AP31941 199 aaPredicted RBP3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 SHMT2P34897 504 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 GGT5P36269 586 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 HSD17B2P37059 387 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 GRIA3P42263 894 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 SLC6A12P48065 614 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CCT8P50990 548 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 RAB28P51157 221 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 CHN2P52757 468 aa3.9□□□□□ -1.79
TMEM39A-204ENST00000468545 ARFIP2P53365 341 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms