RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 MARCH9Q86YJ5 346 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 TICAM1Q8IUC6 712 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 DSELQ8IZU8 1212 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 UCN3Q969E3 161 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 COL26A1Q96A83 441 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 PPCDCQ96CD2 204 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CMTM5Q96DZ9 223 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 MVB12AQ96EY5 273 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 PEX11GQ96HA9 241 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 NPLQ9BXD5 320 aaPredicted RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 LYRM4Q9HD34 91 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CDC14AQ9UNH5 594 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 SATB2Q9UPW6 733 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 PCDHB3Q9Y5E6 796 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 SPTBN2O15020 2390 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CCDC154A6NI56 674 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 H0YIG0 161 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 ANGPT2O15123 496 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 PROM1O43490 865 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CPNE3O75131 537 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 KIAA0754O94854 1291 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 PGRP06401 933 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 ESRRAP11474 423 aaPredicted RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 PCSK2P16519 638 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 FBLP22087 321 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 S100A3P33764 101 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 RPL3P39023 403 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 KIR3DL1P43629 444 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 RAB38P57729 211 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 C21orf58P58505 322 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 RAB15P59190 212 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 EIF3IQ13347 325 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 MMEL1Q495T6 779 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 ZNF385BQ569K4 471 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 DCAF12Q5T6F0 453 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CPTPQ5TA50 214 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CEACAM20Q6UY09 585 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 CCDC121Q6ZUS5 278 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 R3HCC1LQ7Z5L2 792 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 SLC38A9Q8NBW4 561 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 RP9Q8TA86 221 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 EXOSC8Q96B26 276 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 TESCQ96BS2 214 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 PRPF18Q99633 342 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 SLC25A23Q9BV35 468 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 ULBP3Q9BZM4 244 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 WDR41Q9HAD4 459 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 KCMF1Q9P0J7 381 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 TAGLN3Q9UI15 199 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 MAPRE3Q9UPY8 281 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 WBP11Q9Y2W2 641 aaKnown RBP13.82□□□□□ -0.2
TNF-208ENST00000449264 PCDHA9Q9Y5H5 950 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 B3GALT1Q9Y5Z6 326 aa13.82□□□□□ -0.2
TNF-208ENST00000449264 A0A1W2PNU3 283 aaPredicted RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 C1orf226A1L170 272 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 WASHC1A8K0Z3 465 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 GABRR3A8MPY1 467 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 CDC123O75794 336 aaPredicted RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 HBQ1P09105 142 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 LAMP1P11279 417 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 RNH1P13489 461 aaKnown RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 ZNF28P17035 718 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 ITGAXP20702 1163 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 EFNA1P20827 205 aaPredicted RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 PRDX6P30041 224 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 TLX1P31314 330 aaPredicted RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 XCR1P46094 333 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 ACTN3Q08043 901 aaPredicted RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 PDE7AQ13946 482 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 DPY19L1Q2PZI1 675 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 OR4F3Q6IEY1 312 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 PRMT9Q6P2P2 845 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 TMPRSS12Q86WS5 348 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 OR51Q1Q8NH59 317 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 WDR36Q8NI36 951 aaKnown RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 KLHL29Q96CT2 875 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 RCN3Q96D15 328 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 NSL1Q96IY1 281 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 GBP5Q96PP8 586 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 DUSP26Q9BV47 211 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 ZNF304Q9HCX3 659 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 MS4A12Q9NXJ0 267 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 ATP6V1HQ9UI12 483 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 UTS2RQ9UKP6 389 aa13.81□□□□□ -0.2
TNF-208ENST00000449264 NUP214P35658 2090 aaPredicted RBP13.81□□□□□ -0.2
TNF-208ENST00000449264 NUP210LQ5VU65 1888 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 DCDC2BA2VCK2 349 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 FAM227AF5H4B4 570 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 PGRMC2O15173 223 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 CFLARO15519 480 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 ERAL1O75616 437 aaKnown RBP13.8□□□□□ -0.2
TNF-208ENST00000449264 IL6P05231 212 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 DRD2P14416 443 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 HNRNPFP52597 415 aaKnown RBP13.8□□□□□ -0.2
TNF-208ENST00000449264 PLIN5Q00G26 463 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 SRSF11Q05519 484 aaKnown RBP13.8□□□□□ -0.2
TNF-208ENST00000449264 DSG2Q14126 1118 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 REP15Q6BDI9 236 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 ANKRD46Q86W74 232 aa13.8□□□□□ -0.2
TNF-208ENST00000449264 TMEM52Q8NDY8 209 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms