RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 C1orf52Q8N6N3 182 aaKnown RBP11.69□□□□□ -0.54
USP40-205ENST00000430158 GOLGA6L1Q8N7Z2 621 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.69□□□□□ -0.54
USP40-205ENST00000430158 TWIST2Q8WVJ9 160 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 NACC2Q96BF6 587 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 C3orf30Q96M34 536 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 ACBD3Q9H3P7 528 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 MANSC1Q9H8J5 431 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 SEMA3GQ9NS98 782 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 THAP1Q9NVV9 213 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 C3orf18Q9UK00 162 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 A0A1W2PR48 441 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 PIP5K1BO14986 540 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 ALOX12BO75342 701 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 RSL1D1O76021 490 aaKnown RBP11.68□□□□□ -0.54
USP40-205ENST00000430158 HSPA4LO95757 839 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 GBAP04062 536 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 KLK1P06870 262 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 FAM58BPP0C7Q3 252 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 LINC00032P0C843 101 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 NR1D1P20393 614 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 EMP2P54851 167 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 C18orf63Q68DL7 685 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 C19orf48Q6RUI8 117 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 QSOX2Q6ZRP7 698 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 GPR180Q86V85 440 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 NUDT13Q86X67 352 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 HOMEZQ8IX15 550 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 AMER2Q8N7J2 671 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 OR11G2Q8NGC1 345 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 PPP1R14CQ8TAE6 165 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 CKAP2Q8WWK9 683 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 UCN3Q969E3 161 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 ANKRD9Q96BM1 317 aaPredicted RBP11.68□□□□□ -0.54
USP40-205ENST00000430158 TM4SF18Q96CE8 201 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 METTL2AQ96IZ6 378 aaKnown RBP11.68□□□□□ -0.54
USP40-205ENST00000430158 WDR77Q9BQA1 342 aaPredicted RBP11.68□□□□□ -0.54
USP40-205ENST00000430158 CENPKQ9BS16 269 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 CRB3Q9BUF7 120 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 YIPF2Q9BWQ6 316 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 RBCK1Q9BYM8 510 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 ILKAPQ9H0C8 392 aaPredicted RBP11.68□□□□□ -0.54
USP40-205ENST00000430158 MED4Q9NPJ6 270 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 NECTIN3Q9NQS3 549 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 PNPOQ9NVS9 261 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 NMRK1Q9NWW6 199 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 AHSPQ9NZD4 102 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 MKL2Q9ULH7 1088 aa11.68□□□□□ -0.54
USP40-205ENST00000430158 CDC14CA4D256 554 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 WASHC1A8K0Z3 465 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 SLC28A1O00337 649 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 ZNF195O14628 629 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 LSM1O15116 133 aaKnown RBP11.67□□□□□ -0.54
USP40-205ENST00000430158 B4GALT2O60909 372 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 CRCPO75575 148 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 IGHEP01854 428 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 PRR35P0CG20 571 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 PRKAR1AP10644 381 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 RPL14P50914 215 aaKnown RBP11.67□□□□□ -0.54
USP40-205ENST00000430158 IGLV3-21P80748 117 aaPredicted RBP11.67□□□□□ -0.54
USP40-205ENST00000430158 BTKQ06187 659 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 ATP1A4Q13733 1029 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 COL28A1Q2UY09 1125 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 RGS9BPQ6ZS82 235 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 LANCL3Q6ZV70 420 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 TRIM42Q8IWZ5 723 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 ZNF595Q8IYB9 648 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 FAM47BQ8NA70 645 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 AGR3Q8TD06 166 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 ADAMTS18Q8TE60 1221 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 TSLPQ969D9 159 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 COPS7BQ9H9Q2 264 aaPredicted RBP11.67□□□□□ -0.54
USP40-205ENST00000430158 LYARQ9NX58 379 aaKnown RBP11.67□□□□□ -0.54
USP40-205ENST00000430158 TEX10Q9NXF1 929 aaPredicted RBP11.67□□□□□ -0.54
USP40-205ENST00000430158 P4HTMQ9NXG6 502 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 MCM8Q9UJA3 840 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 FBXW2Q9UKT8 454 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 CES1P1Q9UKY3 287 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 FIS1Q9Y3D6 152 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 MMACHCQ9Y4U1 282 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 COL6A6A6NMZ7 2263 aa11.67□□□□□ -0.54
USP40-205ENST00000430158 TCRBV16S1A1N1A0A5B0 115 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 MASP2O00187 686 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 PCDH17O14917 1159 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 CTNSO60931 367 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 PRKRAO75569 313 aaKnown RBP11.66□□□□□ -0.54
USP40-205ENST00000430158 CDC123O75794 336 aaPredicted RBP11.66□□□□□ -0.54
USP40-205ENST00000430158 AIFM1O95831 613 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 HEXBP07686 556 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 COX6A1P12074 109 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 MAOAP21397 527 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 TIA1P31483 386 aaKnown RBP eCLIP11.66□□□□□ -0.54
USP40-205ENST00000430158 OTX2P32243 289 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 HK2P52789 917 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 HSD17B7P56937 341 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 TRA2BP62995 288 aaKnown RBP11.66□□□□□ -0.54
USP40-205ENST00000430158 CXADRP78310 365 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 TNFRSF17Q02223 184 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 PCOLCEQ15113 449 aa11.66□□□□□ -0.54
USP40-205ENST00000430158 TBR1Q16650 682 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms