RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 DNAJB9Q9UBS3 223 aa25.14■■□□□ 1.61
LDB1-202ENST00000425280 RPS6KA6Q9UK32 745 aa25.14■■□□□ 1.61
LDB1-202ENST00000425280 FBXW2Q9UKT8 454 aa25.14■■□□□ 1.61
LDB1-202ENST00000425280 WASHC1A8K0Z3 465 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 K7ESF4 209 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 DLGAP1O14490 977 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 P2RX6O15547 441 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 PRAMEF10O60809 474 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 FKBP9O95302 570 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 CST1P01037 141 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 ZNF888P0CJ79 500 aaPredicted RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 ZNF23P17027 643 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 CXCL12P48061 93 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 HSPB3Q12988 150 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 C1orf216Q8TAB5 229 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 TMBIM1Q969X1 311 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 NEUROD4Q9HD90 331 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 BATF3Q9NR55 127 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 SIRT3Q9NTG7 399 aaPredicted RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 UBAP1Q9NZ09 502 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 SIT1Q9Y3P8 196 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 CEP192Q8TEP8 1941 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 A0A0J9YY10 115 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 OR5K3A6NET4 321 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 GLOD5A6NK44 160 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 EI24O14681 340 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 GUCY1B2O75343 617 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 SLC35G6P0C7Q6 338 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 MAZP56270 477 aaKnown RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 PPP1CAP62136 330 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 SNRPNP63162 240 aaKnown RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 BTN3A2P78410 334 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 VAC14Q08AM6 782 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 TMEM214Q6NUQ4 689 aaKnown RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 CBLL1Q75N03 491 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 BAHD1Q8TBE0 780 aaPredicted RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 LMX1AQ8TE12 382 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 UTP15Q8TED0 518 aaKnown RBP25.13■■□□□ 1.61
LDB1-202ENST00000425280 THAP11Q96EK4 314 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 SLC35C2Q9NQQ7 365 aa25.13■■□□□ 1.61
LDB1-202ENST00000425280 ABCA7Q8IZY2 2146 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 AIFM1O95831 613 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 RELAQ04206 551 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 NHSL2Q5HYW2 709 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 TBPL2Q6SJ96 375 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 UGT2A3Q6UWM9 527 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 EIF3MQ7L2H7 374 aaKnown RBP25.12■■□□□ 1.61
LDB1-202ENST00000425280 OOSP2Q86WS3 158 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 RSC1A1Q92681 617 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 CNBD2Q96M20 576 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 TMEM38AQ9H6F2 299 aa25.12■■□□□ 1.61
LDB1-202ENST00000425280 EML5Q05BV3 1969 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 LOC105369274A0A096LPK9 316 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 LOC102723532A0A0G2JNH3 316 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 PGRMC2O15173 223 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 GCM2O75603 506 aaPredicted RBP25.11■■□□□ 1.61
LDB1-202ENST00000425280 MAGEA2P43356 314 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 CDK9P50750 372 aaKnown RBP25.11■■□□□ 1.61
LDB1-202ENST00000425280 CRYBA2P53672 197 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 MLC1Q15049 377 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 TEAD4Q15561 434 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 SAXO2Q658L1 398 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 FRMPD2BQ6IN97 320 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 TMEM154Q6P9G4 183 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 SLC36A4Q6YBV0 504 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 ZNF438Q7Z4V0 828 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 TMEFF1Q8IYR6 380 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 OR4N4Q8N0Y3 316 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 NEURL3Q96EH8 262 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 ZFYVE21Q9BQ24 234 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 ASPSCR1Q9BZE9 553 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 TYRP1P17643 537 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 RBBP4Q09028 425 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 GK3PQ14409 553 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 C18orf63Q68DL7 685 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 GKN2Q86XP6 184 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 GLIPR2Q9H4G4 154 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 LYARQ9NX58 379 aaKnown RBP25.11■■□□□ 1.61
LDB1-202ENST00000425280 PCDHGB5Q9Y5G0 923 aa25.11■■□□□ 1.61
LDB1-202ENST00000425280 PROM1O43490 865 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 SEMG1P04279 462 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 SMIM10L1P0DMW3 83 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 AQP1P29972 269 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 PRIM2P49643 509 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 NXPH1P58417 271 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 SPIDRQ14159 915 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 LARP7Q4G0J3 582 aaKnown RBP eCLIP25.1■■□□□ 1.612e-7■□□□□ 8.7
LDB1-202ENST00000425280 CHCHD2P9Q5T1J5 151 aaPredicted RBP25.1■■□□□ 1.61
LDB1-202ENST00000425280 VTCN1Q7Z7D3 282 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 PSMA8Q8TAA3 256 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 SMIM10Q96HG1 83 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 AMDHD1Q96NU7 426 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 MAPKAP1Q9BPZ7 522 aa25.1■■□□□ 1.61
LDB1-202ENST00000425280 SH3BP5O60239 455 aa25.09■■□□□ 1.61
LDB1-202ENST00000425280 EEF1A2Q05639 463 aaKnown RBP25.09■■□□□ 1.61
LDB1-202ENST00000425280 DMWDQ09019 674 aa25.09■■□□□ 1.61
LDB1-202ENST00000425280 SCARB2Q14108 478 aa25.09■■□□□ 1.61
LDB1-202ENST00000425280 FKBP9P1Q75LS8 142 aa25.09■■□□□ 1.61
LDB1-202ENST00000425280 RNF44Q7L0R7 432 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms