RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 SIAH3Q8IW03 269 aa17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 PLD6Q8N2A8 252 aaKnown RBP17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 CPSF7Q8N684 471 aaKnown RBP17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 SRFBP1Q8NEF9 429 aaKnown RBP17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 HUS1BQ8NHY5 278 aa17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 IFT81Q8WYA0 676 aa17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 ALOXE3Q9BYJ1 711 aa17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 LIN28AQ9H9Z2 209 aaKnown RBP17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 ZNF358Q9NW07 568 aa17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 MTRF1LQ9UGC7 380 aaKnown RBP17.97■□□□□ 0.47
SMARCB1-204ENST00000407422 EML6Q6ZMW3 1958 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 CCL21O00585 134 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 ZNHIT1O43257 154 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 KLK8O60259 260 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 CA7P43166 264 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 SERPINB8P50452 374 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 ID2Q02363 134 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 RCN2Q14257 317 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 ELAVL1Q15717 326 aaKnown RBP17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 KHDRBS2Q5VWX1 349 aaKnown RBP17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 CHSY3Q70JA7 882 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 PTPMT1Q8WUK0 201 aaPredicted RBP17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 CMTM7Q96FZ5 175 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 MTERF1Q99551 399 aaKnown RBP17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 ROGDIQ9GZN7 287 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 VPS11Q9H270 941 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 VTI1BQ9UEU0 232 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 ANGPTL3Q9Y5C1 460 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 CLCA3PQ9Y6N3 262 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 CSMD1Q96PZ7 3565 aa17.96■□□□□ 0.47
SMARCB1-204ENST00000407422 TMEM200CA6NKL6 621 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 SCELO95171 688 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 SIX3O95343 332 aaPredicted RBP17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 ECHS1P30084 290 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 SSR2P43308 183 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 ALDH18A1P54886 795 aaKnown RBP17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 RBPJQ06330 500 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 STX4Q12846 297 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 AP5B1Q2VPB7 878 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 DEPDC1Q5TB30 811 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 MDGA2Q7Z553 956 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 ZNF321PQ8N8H1 164 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 FAM98AQ8NCA5 519 aaKnown RBP17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 SLC44A1Q8WWI5 657 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 TMEM125Q96AQ2 219 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 CCDC120Q96HB5 630 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 FUT8Q9BYC5 575 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 CPSF2Q9P2I0 782 aaKnown RBP17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 TINAGQ9UJW2 476 aa17.95■□□□□ 0.46
SMARCB1-204ENST00000407422 ZFAND5O76080 213 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 SERPINB1P30740 379 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 C3AR1Q16581 482 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 KRTCAP3Q53RY4 240 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 OR4C11Q6IEV9 310 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 KLC3Q6P597 504 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 TMEM132CQ8N3T6 1108 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 TMEM156Q8N614 296 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ITLN2Q8WWU7 325 aaPredicted RBP17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ANKRD9Q96BM1 317 aaPredicted RBP17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 FMO2Q99518 471 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 CCDC77Q9BR77 488 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ACTR8Q9H981 624 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 DMRT3Q9NQL9 472 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 CCDC189A1A4V9 331 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ASNA1O43681 348 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ZNF24P17028 368 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 RFC3P40938 356 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 HSF1Q00613 529 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 SLAMF1Q13291 335 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 GTF2H2Q13888 395 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 PCBP2Q15366 365 aaKnown RBP eCLIP17.94■□□□□ 0.461e-6■■■■■ 28.5
SMARCB1-204ENST00000407422 TECRLQ5HYJ1 363 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 LIPJQ5W064 366 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 GTF2H2CQ6P1K8 395 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 GOLGA7Q7Z5G4 137 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 SULF2Q8IWU5 870 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 OR4N5Q8IXE1 308 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 CYP4Z2PQ8N1L4 340 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 OR8D2Q9GZM6 311 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 ZNF835Q9Y2P0 537 aa17.94■□□□□ 0.46
SMARCB1-204ENST00000407422 NCOA6Q14686 2063 aaPredicted RBP17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 ADGRG4Q8IZF6 3080 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 C17orf105B2RV13 164 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 PLPP1O14494 284 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 OR2J2O76002 312 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 MLYCDO95822 493 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 INHBAP08476 426 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 CPN2P22792 545 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 PIK3CBP42338 1070 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 MEOX1P50221 254 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 SSR4P51571 173 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 RPS13P62277 151 aaKnown RBP17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 CPSF6Q16630 551 aaKnown RBP eCLIP17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 CEP128Q6ZU80 1094 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 UHMK1Q8TAS1 419 aaKnown RBP17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 DAZLQ92904 295 aaKnown RBP17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 RGMAQ96B86 450 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 MAGED4Q96JG8 741 aa17.93■□□□□ 0.46
SMARCB1-204ENST00000407422 PAFAH2Q99487 392 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms