RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TNS1Q9HBL0 1735 aaKnown RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF840PA6NDX5 716 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 BCHEP06276 602 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 SOX3P41225 446 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 MAGEA2P43356 314 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 ETV1P50549 477 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 RNF144AP50876 292 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 SLBPQ14493 270 aaKnown RBP eCLIP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 C10orf62Q5T681 223 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 AGTRAPQ6RW13 159 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 SHFQ7M4L6 423 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 CELF5Q8N6W0 485 aaKnown RBP11.46□□□□□ -0.58
HMGB1-206ENST00000405805 COL21A1Q96P44 957 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 BBS4Q96RK4 519 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 ASPNQ9BXN1 380 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 ANGPT4Q9Y264 503 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 OARD1Q9Y530 152 aa11.46□□□□□ -0.58
HMGB1-206ENST00000405805 NPIPB15A6NHN6 443 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 GMDSO60547 372 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ADAMTS4O75173 837 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 HPRP00739 348 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CAPNS1P04632 268 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CDK6Q00534 326 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 MLLT1Q03111 559 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 DOC2AQ14183 400 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 GFOD2Q3B7J2 385 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 GPAT3Q53EU6 434 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 STEAP3Q658P3 488 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 RSPO2Q6UXX9 243 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 OR6Q1Q8NGQ2 317 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 RDH12Q96NR8 316 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 SLC30A2Q9BRI3 323 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 POLR2J3Q9H1A7 115 aaKnown RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ZDHHC3Q9NYG2 299 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 TRAV6A0A075B6T7 132 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 TAPBPO15533 448 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 PCDHGA12O60330 932 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CLCN7P51798 805 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 UGT2B15P54855 530 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ELOAQ14241 798 aaKnown RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 XKR7Q5GH72 579 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ADNP2Q6IQ32 1131 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CXorf57Q6NSI4 855 aaKnown RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 C10orf111Q8N326 155 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 DPP10Q8N608 796 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 TANKQ92844 425 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 RELTQ969Z4 430 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 AP2M1Q96CW1 435 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 SGTBQ96EQ0 304 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CCM2Q9BSQ5 444 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ACTL8Q9H568 366 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 SUV39H2Q9H5I1 410 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 TMEM39AQ9NV64 488 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CEP290O15078 2479 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 E7EQ34 232 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ARNTLO00327 626 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 HOXC11O43248 304 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ELFN1P0C7U0 828 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 ITGA2P17301 1181 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 CCR7P32248 378 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 GPR85P60893 370 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 SLC14A1Q13336 389 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 BCDIN3DQ7Z5W3 292 aaKnown RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 SAMD14Q8IZD0 417 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 IQCF1Q8N6M8 205 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 SRFBP1Q8NEF9 429 aaKnown RBP11.45□□□□□ -0.58
HMGB1-206ENST00000405805 IL17FQ96PD4 163 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 PFDN5Q99471 154 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 P2RY13Q9BPV8 354 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 WACQ9BTA9 647 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 FNDC11Q9BVV2 318 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 GORASP2Q9H8Y8 452 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 FNIP2Q9P278 1114 aa11.45□□□□□ -0.58
HMGB1-206ENST00000405805 A0A1W2PRB8 838 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 WNT9AO14904 365 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 OAZ2O95190 189 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 IGLV3-25P01717 112 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 GALTP07902 379 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 CTSOP43234 321 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 POLR2LP62875 67 aaKnown RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 BCL7AQ4VC05 210 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 FLYWCH1Q4VC44 716 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 DCST1Q5T197 706 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 ANXA8L1Q5VT79 327 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 SHQ1Q6PI26 577 aaKnown RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NPAS3Q8IXF0 933 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 SPAG16Q8N0X2 631 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 MEIOBQ8N635 442 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 DOK4Q8TEW6 326 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 IPCEF1Q8WWN9 437 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 SPATA9Q9BWV2 254 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 IL20RAQ9UHF4 553 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 MGAT4BQ9UQ53 548 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 RBBP6Q7Z6E9 1792 aaKnown RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-206ENST00000405805 MID1O15344 667 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 NPR2P20594 1047 aa11.44□□□□□ -0.58
HMGB1-206ENST00000405805 ACRV1P26436 265 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms