RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 VPS9D1Q9Y2B5 631 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 SLC9A8Q9Y2E8 581 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 ANXA8P13928 327 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.34■□□□□ 0.21
PTPRA-205ENST00000399903 SERINC3Q13530 473 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 MRPL58Q14197 206 aaKnown RBP16.34■□□□□ 0.21
PTPRA-205ENST00000399903 GALEQ14376 348 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 CCDC149Q6ZUS6 474 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 SERPINA11Q86U17 422 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 GHDCQ8N2G8 530 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 ZNF680Q8NEM1 530 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 GPR156Q8NFN8 814 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 PEX13Q92968 403 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 PKP4Q99569 1192 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 EPYCQ99645 322 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 VN1R3Q9BXE9 311 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 MED28Q9H204 178 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 NIPAL2Q9H841 368 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 B3GNT2Q9NY97 397 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 SEC14L4Q9UDX3 406 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 STUB1Q9UNE7 303 aa16.34■□□□□ 0.21
PTPRA-205ENST00000399903 FADS2P1A8MWK0 482 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 ZNF81P51508 661 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 IL10RBQ08334 325 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 EIF4HQ15056 248 aaKnown RBP16.33■□□□□ 0.2
PTPRA-205ENST00000399903 ZBTB37Q5TC79 503 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 KRT74Q7RTS7 529 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 KCTD20Q7Z5Y7 419 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 SLC22A12Q96S37 553 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 SLC35F4A4IF30 521 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 COCHO43405 550 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 PRAMEF1O95521 474 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 CRYBB2P43320 205 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 TSTA3Q13630 321 aaPredicted RBP16.33■□□□□ 0.2
PTPRA-205ENST00000399903 LRRC17Q8N6Y2 441 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 ZBTB44Q8NCP5 570 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 CEP76Q8TAP6 659 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 RAD9AQ99638 391 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 AIFM2Q9BRQ8 373 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 DOHHQ9BU89 302 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 ATG10Q9H0Y0 220 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 LINC00597Q9H2U6 94 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 C12orf10Q9HB07 376 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 RDH8Q9NYR8 311 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 RAB23Q9ULC3 237 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 ING4Q9UNL4 249 aa16.33■□□□□ 0.2
PTPRA-205ENST00000399903 ZNF670-ZNF695F2Z2N8 137 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 ETFAP13804 333 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 CTRB1P17538 263 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 IL1RNP18510 177 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 HLA-DMAP28067 261 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 ABATP80404 500 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 C2orf80Q0P641 193 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TAF1AQ15573 450 aaPredicted RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 ATAT1Q5SQI0 421 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 CTRB2Q6GPI1 263 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 NPAS4Q8IUM7 802 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TCEANCQ8N8B7 351 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 GDPD1Q8N9F7 314 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 OR5AK3PQ8NH89 298 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 CREB3L4Q8TEY5 395 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TTC9Q92623 222 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 DCLRE1CQ96SD1 692 aaKnown RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TMEM121BQ9BXQ6 578 aaPredicted RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TXNL4BQ9NX01 149 aaKnown RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 GSAPA4D1B5 854 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 OR6C75A6NL08 312 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TMEM189-UBE2V1I3L0A0 370 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 SCG5P05408 212 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 ALPIP09923 528 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 CORO1AP31146 461 aaKnown RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 ATP5C1P36542 298 aaKnown RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TNK1Q13470 666 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 GLYR1Q49A26 553 aaPredicted RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 IQCF1Q8N6M8 205 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 OR52P1PQ8NH57 321 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 DNAJA4Q8WW22 397 aaPredicted RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 HYLS1Q96M11 299 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 NELL2Q99435 816 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.32■□□□□ 0.26e-7■□□□□ 10.8
PTPRA-205ENST00000399903 ACSL6Q9UKU0 697 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 SCML1Q9UN30 329 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 DHRS7Q9Y394 339 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 SNX11Q9Y5W9 270 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 GREB1Q4ZG55 1949 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 RFXAPO00287 272 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 RFPL3O75679 317 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 GADD45GO95257 159 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 CHMP24386 653 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 CTBP2P56545 445 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 ERICH5Q6P6B1 374 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 TMEM65Q6PI78 240 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 SHFQ7M4L6 423 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 PLPP6Q8IY26 295 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 RBFOX1Q9NWB1 397 aaKnown RBP16.32■□□□□ 0.2
PTPRA-205ENST00000399903 PCDHB9Q9Y5E1 797 aa16.32■□□□□ 0.2
PTPRA-205ENST00000399903 BNIP3LO60238 219 aa16.31■□□□□ 0.2
PTPRA-205ENST00000399903 TPST2O60704 377 aa16.31■□□□□ 0.2
PTPRA-205ENST00000399903 GBAP04062 536 aa16.31■□□□□ 0.2
PTPRA-205ENST00000399903 HBQ1P09105 142 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms