RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ALDH3A1P30838 453 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 OR4D2P58180 307 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 TCHHL1Q5QJ38 904 aaPredicted RBP20.38■□□□□ 0.85
CLN3-207ENST00000395653 PLAG1Q6DJT9 500 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 PAPD4Q6PIY7 484 aaKnown RBP20.38■□□□□ 0.85
CLN3-207ENST00000395653 TRMOQ9BU70 441 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 GATA5Q9BWX5 397 aaPredicted RBP20.38■□□□□ 0.85
CLN3-207ENST00000395653 NECTIN3Q9NQS3 549 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 LYARQ9NX58 379 aaKnown RBP20.38■□□□□ 0.85
CLN3-207ENST00000395653 ADAM29Q9UKF5 820 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 FBXW2Q9UKT8 454 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 SLC12A4Q9UP95 1085 aa20.38■□□□□ 0.85
CLN3-207ENST00000395653 EEDO75530 441 aaKnown RBP20.37■□□□□ 0.85
CLN3-207ENST00000395653 CPN2P22792 545 aa20.37■□□□□ 0.85
CLN3-207ENST00000395653 ACTN3Q08043 901 aaPredicted RBP20.37■□□□□ 0.85
CLN3-207ENST00000395653 C19orf57Q0VDD7 668 aa20.37■□□□□ 0.85
CLN3-207ENST00000395653 CSTF3Q12996 717 aaKnown RBP20.37■□□□□ 0.85
CLN3-207ENST00000395653 SLC13A2Q13183 592 aa20.37■□□□□ 0.85
CLN3-207ENST00000395653 MRM1Q6IN84 353 aaKnown RBP20.37■□□□□ 0.85
CLN3-207ENST00000395653 METTL4Q8N3J2 472 aa20.37■□□□□ 0.85
CLN3-207ENST00000395653 GBP7Q8N8V2 638 aaPredicted RBP20.37■□□□□ 0.85
CLN3-207ENST00000395653 MRPL1Q9BYD6 325 aaKnown RBP20.37■□□□□ 0.85
CLN3-207ENST00000395653 CLDN16Q9Y5I7 305 aa20.37■□□□□ 0.85
CLN3-207ENST00000395653 B8ZZF3 427 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 CTNSO60931 367 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 ETV4P43268 484 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 EXT1Q16394 746 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 AGAP7PQ5VUJ5 663 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 FAM219BQ5XKK7 198 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 JMJD6Q6NYC1 403 aaPredicted RBP20.36■□□□□ 0.85
CLN3-207ENST00000395653 CYP20A1Q6UW02 462 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 PAGE2Q7Z2X7 111 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 GPR180Q86V85 440 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 EFCAB3Q8N7B9 438 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 SREK1Q8WXA9 508 aaKnown RBP20.36■□□□□ 0.85
CLN3-207ENST00000395653 CNDP1Q96KN2 507 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 AGAP4Q96P64 663 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 KCNA7Q96RP8 456 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 HBEGFQ99075 208 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 STMN4Q9H169 189 aaPredicted RBP20.36■□□□□ 0.85
CLN3-207ENST00000395653 TIMM22Q9Y584 194 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 SERTM1A2A2V5 107 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 TGFBR3LH3BV60 316 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 TMPRSS11DO60235 418 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 BUD31P41223 144 aaPredicted RBP20.36■□□□□ 0.85
CLN3-207ENST00000395653 HTR6P50406 440 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 FOXA1P55317 472 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 HNRNPH2P55795 449 aaKnown RBP20.36■□□□□ 0.85
CLN3-207ENST00000395653 TNFRSF17Q02223 184 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 KLRB1Q12918 225 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 CASP8Q14790 479 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 BTBD16Q32M84 506 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 IGFL3Q6UXB1 125 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 PTRH1Q86Y79 214 aaKnown RBP20.36■□□□□ 0.85
CLN3-207ENST00000395653 C7orf57Q8NEG2 295 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 M1APQ8TC57 530 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 PSMF1Q92530 271 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 MECRQ9BV79 373 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 VPS29Q9UBQ0 182 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 ANAPC2Q9UJX6 822 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 ATG4BQ9Y4P1 393 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 ASB4Q9Y574 426 aa20.36■□□□□ 0.85
CLN3-207ENST00000395653 TM9SF1O15321 606 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 NPHS1O60500 1241 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 DPM1O60762 260 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 CELA2AP08217 269 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 FAM58BPP0C7Q3 252 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 TLX1P31314 330 aaPredicted RBP20.35■□□□□ 0.85
CLN3-207ENST00000395653 SLC26A5P58743 744 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 GALNT1Q10472 559 aaPredicted RBP20.35■□□□□ 0.85
CLN3-207ENST00000395653 TBL3Q12788 808 aaKnown RBP20.35■□□□□ 0.85
CLN3-207ENST00000395653 TERF2Q15554 542 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 CRB2Q5IJ48 1285 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 BRIX1Q8TDN6 353 aaKnown RBP20.35■□□□□ 0.85
CLN3-207ENST00000395653 TM9SF4Q92544 642 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 RPF2Q9H7B2 306 aaKnown RBP20.35■□□□□ 0.85
CLN3-207ENST00000395653 MMP25Q9NPA2 562 aa20.35■□□□□ 0.85
CLN3-207ENST00000395653 SAGE2PA6NJ88 616 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 PROM1O43490 865 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 CRCPO75575 148 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 BPGMP07738 259 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 ITGAMP11215 1152 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 TPP2P29144 1249 aaPredicted RBP20.34■□□□□ 0.85
CLN3-207ENST00000395653 IGFL2Q6UWQ7 119 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 ISLR2Q6UXK2 745 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 COMMD6Q7Z4G1 85 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 CLNKQ7Z7G1 428 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 TEX19Q8NA77 164 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 ZBTB9Q96C00 473 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 ACPTQ9BZG2 426 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 SCN2AQ99250 2005 aa20.34■□□□□ 0.85
CLN3-207ENST00000395653 DOCK10Q96BY6 2186 aa20.33■□□□□ 0.85
CLN3-207ENST00000395653 TNRC6AQ8NDV7 1962 aaKnown RBP20.33■□□□□ 0.85
CLN3-207ENST00000395653 ARHGAP10A1A4S6 786 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 GOLGA6L10A6NI86 522 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 GBAP04062 536 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 KLK1P06870 262 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 UROSP10746 265 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 PPP2R1BP30154 601 aa20.33■□□□□ 0.84
CLN3-207ENST00000395653 SOX11P35716 441 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms