RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CCDC86Q9H6F5 360 aaKnown RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF395Q9H8N7 513 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 AKTIPQ9H8T0 292 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 SH2D2AQ9NP31 389 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 PNPOQ9NVS9 261 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 NOP53Q9NZM5 478 aaKnown RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 CROTQ9UKG9 612 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 PCDHGB6Q9Y5F9 930 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 TRBV5-3A0A0A0MS03 114 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 FAM149AA5PLN7 773 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF891A8MT65 544 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 TO15178 435 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 CREG1O75629 220 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 CHEK2O96017 543 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 ZCCHC18P0CG32 403 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 HMOX2P30519 316 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 TRHRP34981 398 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 CPSF6Q16630 551 aaKnown RBP eCLIP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 RFTN2Q52LD8 501 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF628Q5EBL2 1059 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 IGFL3Q6UXB1 125 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 PLD3Q8IV08 490 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 OR7G1Q8NGA0 311 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 OR9A4Q8NGU2 314 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 LRRC8CQ8TDW0 803 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 TTC9Q92623 222 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 MAPKAP1Q9BPZ7 522 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 VN1R1Q9GZP7 353 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 CHST8Q9H2A9 424 aa6.59□□□□□ -1.35
LIMA1-202ENST00000394943 BSNQ9UPA5 3926 aa6.59□□□□□ -1.36
LIMA1-202ENST00000394943 SAGE2PA6NJ88 616 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 TMEM233B4DJY2 109 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SCAMP2O15127 329 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 HSPA4LO95757 839 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 AIFM1O95831 613 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CCNYL3P0C7X3 344 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 BCKDHAP12694 445 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PTPN6P29350 595 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 AP2B1P63010 937 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CRB2Q5IJ48 1285 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CLEC6AQ6EIG7 209 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 RIPOR1Q6ZS17 1223 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CRLF3Q8IUI8 442 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 GPALPP1Q8IXQ4 340 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CCNYL1Q8N7R7 359 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 DNAJB8Q8NHS0 232 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 STT3BQ8TCJ2 826 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SFXN5Q8TD22 340 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PPP4R1Q8TF05 950 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 HEY2Q9UBP5 337 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 BTNL2Q9UIR0 455 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PCDHGA9Q9Y5G4 932 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 HS3ST3B1Q9Y662 390 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 RNASET2O00584 256 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ERI3O43414 337 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 KLHL41O60662 606 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 TGFB1P01137 390 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 KLK3P07288 261 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 WT1P19544 449 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CERS1P27544 350 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PRDX6P30041 224 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 LCN1P31025 176 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 NEK2P51955 445 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SLAMF1Q13291 335 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 IL10RAQ13651 578 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PRICKLE4Q2TBC4 344 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PLAG1Q6DJT9 500 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SPACA3Q8IXA5 215 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 DND1Q8IYX4 353 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 FAM47BQ8NA70 645 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 CENPKQ9BS16 269 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ADNPQ9H2P0 1102 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 OR51B5Q9H339 312 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 AKIRIN1Q9H9L7 192 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 DLGAP4Q9Y2H0 992 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ATG4BQ9Y4P1 393 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 TIMM22Q9Y584 194 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ANKRD12Q6UB98 2062 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 A0A0A6YYC8 382 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 I3L1I5 382 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PLOD3O60568 738 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SOX30O94993 753 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 GPR75O95800 540 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 DDAH2O95865 285 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 ABCB1P08183 1280 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 IDO1P14902 403 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 DDX5P17844 614 aaKnown RBP6.58□□□□□ -1.36
LIMA1-202ENST00000394943 LBPP18428 481 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 PRPS1L1P21108 318 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 MAPK10P53779 464 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 AP5B1Q2VPB7 878 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SLC9B1Q4ZJI4 515 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 HSP90B2PQ58FF3 399 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 LRIF1Q5T3J3 769 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 TTLL10Q6ZVT0 673 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 MARCH9Q86YJ5 346 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 RNF175Q8N4F7 328 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 DPP10Q8N608 796 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 SLC15A4Q8N697 577 aa6.58□□□□□ -1.36
LIMA1-202ENST00000394943 C1orf52Q8N6N3 182 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms