RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 MTERF3Q96E29 417 aa13.57□□□□□ -0.24
SHROOM1-203ENST00000378679 IL4I1Q96RQ9 567 aa13.57□□□□□ -0.24
SHROOM1-203ENST00000378679 DMRT3Q9NQL9 472 aa13.57□□□□□ -0.24
SHROOM1-203ENST00000378679 LYARQ9NX58 379 aaKnown RBP13.57□□□□□ -0.24
SHROOM1-203ENST00000378679 STOML2Q9UJZ1 356 aa13.57□□□□□ -0.24
SHROOM1-203ENST00000378679 BRWD1Q9NSI6 2320 aa13.57□□□□□ -0.24
SHROOM1-203ENST00000378679 AGR2O95994 175 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 C9P02748 559 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 TFPIP10646 304 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 FMO3P31513 532 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 ARHGAP19Q14CB8 494 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 CCSMST1Q4G0I0 132 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 OR4C11Q6IEV9 310 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 LCN8Q6JVE9 175 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 C12orf40Q86WS4 652 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 POMGNT2Q8NAT1 580 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 FAM98AQ8NCA5 519 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 MAL2Q969L2 176 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 CITED4Q96RK1 184 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 SORBS1Q9BX66 1292 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 GIN1Q9NXP7 522 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 TET1Q8NFU7 2136 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 TMEM202A6NGA9 273 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 GPR89AB7ZAQ6 455 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 GPR89BP0CG08 455 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 MAOBP27338 520 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 RPS15AP62244 130 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 ZNF267Q14586 743 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 SMU1Q2TAY7 513 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 FAM214AQ32MH5 1076 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 NDUFAF5Q5TEU4 345 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 SMARCD3Q6STE5 483 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 HMGN2P46Q86SG4 172 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 TDHQ8IZJ6 230 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 ZNF740Q8NDX6 193 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 ZNF419Q96HQ0 510 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 DEPDC7Q96QD5 511 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 UHRF1Q96T88 793 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 NELL2Q99435 816 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 BHLHE41Q9C0J9 482 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 ANKMY1Q9P2S6 941 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 EBF1Q9UH73 591 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 OR51B4Q9Y5P0 310 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 C1orf226A1L170 272 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 RBBP4Q09028 425 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 PHF19Q5T6S3 580 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 LCTLQ6UWM7 567 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 LUZP2Q86TE4 346 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 INSM2Q96T92 566 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 COPS4Q9BT78 406 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 BRF2Q9HAW0 419 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 TM9SF3Q9HD45 589 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 POLE4Q9NR33 117 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 ZSCAN32Q9NX65 697 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 TMEM181Q9P2C4 612 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 CASP8AP2Q9UKL3 1982 aa13.56□□□□□ -0.24
SHROOM1-203ENST00000378679 SNAP29O95721 258 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 IFNGP01579 166 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 TALDO1P37837 337 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 KCNC4Q03721 635 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 DEFB110Q30KQ9 67 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 FOXB2Q5VYV0 432 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 PLA2G15Q8NCC3 412 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 HDAC8Q9BY41 377 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 TOR3AQ9H497 397 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 PTGFRNQ9P2B2 879 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 SERTAD3Q9UJW9 196 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ZDBF2Q9HCK1 2354 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 MYO10Q9HD67 2058 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 PRSS38A1L453 326 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 LINC01565O15544 149 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 IST1P53990 364 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 EIPR1Q53HC9 387 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ARHGAP40Q5TG30 622 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 VTCN1Q7Z7D3 282 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ALPK1Q96QP1 1244 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 TPK1Q9H3S4 243 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 CUEDC1Q9NWM3 386 aaPredicted RBP13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 RGPD3A6NKT7 1758 aaPredicted RBP13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 RGPD4Q7Z3J3 1758 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 FAM25AB3EWG3 89 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 FAM25CB3EWG5 89 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 FAM25GB3EWG6 89 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 DRD2P14416 443 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ARRB2P32121 409 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 PSMD4P55036 377 aaKnown RBP13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ATP6AP1Q15904 470 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ALG11Q2TAA5 492 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ZSWIM9Q86XI8 627 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 UBE2J2Q8N2K1 259 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ATP6V1C2Q8NEY4 427 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 ZDHHC12Q96GR4 267 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 DMRTB1Q96MA1 342 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 TIMM29Q9BSF4 260 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 PELI2Q9HAT8 420 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 PDE7BQ9NP56 450 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 SLC35C2Q9NQQ7 365 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 TM7SF3Q9NS93 570 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 GFRA2O00451 464 aa13.55□□□□□ -0.24
SHROOM1-203ENST00000378679 FBP2O00757 339 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms