RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 BCAS2O75934 225 aaPredicted RBP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 GAS8O95995 478 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 KRTAP1-4P0C5Y4 121 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ODC1P11926 461 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 KRT3P12035 628 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 SKILP12757 684 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 UGT1A6P19224 532 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 CTNNA2P26232 953 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 SLC1A3P43003 542 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 CYCSP99999 105 aaKnown RBP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 GALK2Q01415 458 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 GUCY2DQ02846 1103 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ZFP36L1Q07352 338 aaKnown RBP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 SRSF9Q13242 221 aaKnown RBP eCLIP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 STXBP2Q15833 593 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ATP1A1-AS1Q5TC04 95 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 MACC1Q6ZN28 852 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 RABEPKQ7Z6M1 372 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 SLC39A11Q8N1S5 342 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 TEX26Q8N6G2 289 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM99Q8N816 258 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 CD99L2Q8TCZ2 262 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 SLC35C1Q96A29 364 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 CCDC47Q96A33 483 aaKnown RBP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ULK4Q96C45 1275 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF560Q96MR9 790 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM237Q96Q45 408 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 IL12RB2Q99665 862 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 UBAC1Q9BSL1 405 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 NTMT1Q9BV86 223 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ZCCHC3Q9NUD5 404 aaKnown RBP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 DBF4Q9UBU7 674 aaPredicted RBP1.76□□□□□ -2.13
VPS13A-206ENST00000376646 APPL1Q9UKG1 709 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ETV7Q9Y603 341 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 TEX264Q9Y6I9 313 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 C2orf92A0A1B0GVN3 265 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ASB14A6NK59 587 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 PSMD3O43242 534 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SYT7O43581 403 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZBTB14O43829 449 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FOLR2P14207 255 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM50BP56557 158 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CNTN1Q12860 1018 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 GIT2Q14161 759 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 GRB14Q14449 540 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TAB1Q15750 504 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FAM189A2Q15884 450 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 KRTAP13-3Q3SY46 172 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FAM106AQ4KMX7 169 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 LYPLAL1Q5VWZ2 237 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ETFRF1Q6IPR1 90 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 RAB12Q6IQ22 244 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM64Q6YI46 380 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 RFPL4BQ6ZWI9 263 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF410Q86VK4 478 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ABHD12Q8N2K0 398 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CCDC185Q8N715 623 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 RTL3Q8N8U3 475 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 RNF149Q8NC42 400 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 OR8H1Q8NGG4 311 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 OR13C5Q8NGS8 318 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SPATA18Q8TC71 538 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SMPDL3AQ92484 453 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 HAS2Q92819 552 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CASP10Q92851 521 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CFAP36Q96G28 342 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF274Q96GC6 653 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 LRRC2Q9BYS8 371 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF665Q9H7R5 613 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 PANK3Q9H999 370 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 THAP10Q9P2Z0 257 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 PILRAQ9UKJ1 303 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FOXA2Q9Y261 457 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TDRKHQ9Y2W6 561 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 DHX29Q7Z478 1369 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 GTPBP10A4D1E9 387 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SLC15A5A6NIM6 579 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 A8MXK9 166 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SHISA9B4DS77 424 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TLR4O00206 839 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CHUKO15111 745 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 B4GAT1O43505 415 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 BCL2L11O43521 198 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ECE2O60344 883 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 STBD1O95210 358 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 CXCL14O95715 111 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 HPRP00739 348 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 IGKV3-15P01624 115 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ABHD2P08910 425 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FERP16591 822 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 OXTRP30559 389 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 FEN1P39748 380 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ETV5P41161 510 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 GK2Q14410 553 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 PKN2Q16513 984 aaKnown RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 SPANXN4Q5MJ08 99 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF776Q68DI1 518 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TCEAL6Q6IPX3 200 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 TATDN1Q6P1N9 297 aa1.75□□□□□ -2.13
VPS13A-206ENST00000376646 GDPGP1Q6ZNW5 385 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms