RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TRGV8A0A0C4DH27 118 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 ACSL3O95573 720 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 IFNA16P05015 189 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 ECHS1P30084 290 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 PIK3CBP42338 1070 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 CA7P43166 264 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 MAGEA12P43365 314 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 STX4Q12846 297 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 GLE1Q53GS7 698 aaKnown RBP20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 SIAH3Q8IW03 269 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 PLD6Q8N2A8 252 aaKnown RBP20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 HUS1BQ8NHY5 278 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 IFT81Q8WYA0 676 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 TMEM125Q96AQ2 219 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 FMO2Q99518 471 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 CCDC77Q9BR77 488 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 ALOXE3Q9BYJ1 711 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 VPS11Q9H270 941 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 ACTR8Q9H981 624 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 SPACA6W5XKT8 324 aa20.22■□□□□ 0.83
CCDC28B-201ENST00000373602 LRRC14BA6NHZ5 514 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 PRKNO60260 465 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 UGDHO60701 494 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 ITGA10O75578 1167 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 ZFAND5O76080 213 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 INHBAP08476 426 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 CTAGE8P0CG41 777 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 DCTP40126 519 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 SSR2P43308 183 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 DDX39BQ13838 428 aaKnown RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 SERTAD2Q14140 314 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 TECRLQ5HYJ1 363 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 ZNF787Q6DD87 383 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 METTL2BQ6P1Q9 378 aaKnown RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 MYLK4Q86YV6 388 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 CTAGE4Q8IX94 777 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 RNF175Q8N4F7 328 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 PTPMT1Q8WUK0 201 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 DAZLQ92904 295 aaKnown RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 TSPAN10Q9H1Z9 355 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 DMRT3Q9NQL9 472 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 CPSF2Q9P2I0 782 aaKnown RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 PCDHGA11Q9Y5H2 935 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 TNPO3Q9Y5L0 923 aaKnown RBP20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 CLCA3PQ9Y6N3 262 aa20.21■□□□□ 0.83
CCDC28B-201ENST00000373602 MYO7BQ6PIF6 2116 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 MYOCOSA0A1B0GUC4 107 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 NPIPA5E9PKD4 350 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 H0YIV9 168 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 SAP18O00422 153 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 SLC19A2O60779 497 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 LDB3O75112 727 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 TUBB4AP04350 444 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 PIK3CGP48736 1102 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 SERPINB9P50453 376 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 GTF2H2Q13888 395 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 OR4C11Q6IEV9 310 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 GTF2H2CQ6P1K8 395 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 GOLGA7Q7Z5G4 137 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 TMEM156Q8N614 296 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 CPSF7Q8N684 471 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 MORN4Q8NDC4 146 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 OR14A16Q8NHC5 309 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 RGMAQ96B86 450 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 ANKRD9Q96BM1 317 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 PAFAH2Q99487 392 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 SORBS1Q9BX66 1292 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF358Q9NW07 568 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 NPIPA1Q9UND3 350 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF835Q9Y2P0 537 aa20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 KLF13Q9Y2Y9 288 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 YARS2Q9Y2Z4 477 aaKnown RBP20.2■□□□□ 0.82
CCDC28B-201ENST00000373602 UNC79Q9P2D8 2635 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 TMEM200CA6NKL6 621 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 CCL21O00585 134 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 ASNA1O43681 348 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 SIX3O95343 332 aaPredicted RBP20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 CPN2P22792 545 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 ARFIP1P53367 373 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 RNFT1Q5M7Z0 435 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 CYP4Z2PQ8N1L4 340 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 L3MBTL4Q8NA19 623 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 C7orf57Q8NEG2 295 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 REPS1Q96D71 796 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 MTERF1Q99551 399 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 CENPKQ9BS16 269 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 IPPKQ9H8X2 491 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 SUCOQ9UBS9 1254 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 IKBKGQ9Y6K9 419 aa20.19■□□□□ 0.82
CCDC28B-201ENST00000373602 PLPP1O14494 284 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 RBP1P09455 135 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 ZNF24P17028 368 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 PTX3P26022 381 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 SSR4P51571 173 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 RAP1GDS1P52306 607 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 CASP6P55212 293 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 RPS13P62277 151 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 PHEXP78562 749 aa20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 IGLV3-21P80748 117 aaPredicted RBP20.18■□□□□ 0.82
CCDC28B-201ENST00000373602 ID2Q02363 134 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms