RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 B4GALT2O60909 372 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 DNAJB6O75190 326 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 TNFRSF21O75509 655 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 UBXN7O94888 489 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 FKBP9O95302 570 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 SLC35G6P0C7Q6 338 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 FASP25445 335 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 OGFOD3Q6PK18 319 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 SHISA5Q8N114 240 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 OR52N2Q8NGI0 321 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 OR10Q1Q8NGQ4 319 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 ZCCHC10Q8TBK6 192 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 OR5P2Q8WZ92 322 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 EME1Q96AY2 570 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 MAPKAP1Q9BPZ7 522 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 UCK1Q9HA47 277 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 OLAHQ9NV23 265 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 EHD3Q9NZN3 535 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 CES1P1Q9UKY3 287 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 LRCH1Q9Y2L9 728 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 PI4KAP42356 2102 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 SCN2AQ99250 2005 aa13.06□□□□□ -0.32
PTPRF-202ENST00000372405 A0A1W2PS29 197 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 PROM1O43490 865 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 GCM2O75603 506 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CTSBP07858 339 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 RAP2AP10114 183 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CDK9P50750 372 aaKnown RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 MANFP55145 182 aaKnown RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 BNC1Q01954 994 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 DUSP2Q05923 314 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ATP6AP1Q15904 470 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 WDR45BQ5MNZ6 344 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ANGPTL8Q6UXH0 198 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 RNF130Q86XS8 419 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 GALNT4Q8N4A0 578 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 TRIML2Q8N7C3 387 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ICA1LQ8NDH6 482 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CATSPER1Q8NEC5 780 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 THAP11Q96EK4 314 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CENPNQ96H22 339 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SEMA6CQ9H3T2 930 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 GLIPR2Q9H4G4 154 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 PRMT8Q9NR22 394 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 C1GALT1Q9NS00 363 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CORO2BQ9UQ03 480 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ZDBF2Q9HCK1 2354 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CCDC163A0A0D9SF12 145 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 LILRA5A6NI73 299 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SAC3D1A6NKF1 404 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SOCS2O14508 198 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 IL1RNP18510 177 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 UQCRC2P22695 453 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SOAT1P35610 550 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CRATP43155 626 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CAPZBP47756 277 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 C21orf59P57076 290 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SIGLEC14Q08ET2 396 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 HSPB3Q12988 150 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 NRF1Q16656 503 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ZNF750Q32MQ0 723 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 DEFB134Q4QY38 66 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 FAM98BQ52LJ0 330 aaKnown RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ERICH5Q6P6B1 374 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 PRSS41Q7RTY9 318 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 MAML2Q8IZL2 1156 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SLC25A45Q8N413 288 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 NATD1Q8N6N6 113 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 PSMA8Q8TAA3 256 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CNRIP1Q96F85 164 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 FAIM2Q9BWQ8 316 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SPATA9Q9BWV2 254 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ASPSCR1Q9BZE9 553 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 NTN4Q9HB63 628 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 IL21RQ9HBE5 538 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SLC35C2Q9NQQ7 365 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ACSS1Q9NUB1 689 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 KCMF1Q9P0J7 381 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 CNOT11Q9UKZ1 510 aaKnown RBP13.05□□□□□ -0.32
PTPRF-202ENST00000372405 MAP4K5Q9Y4K4 846 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SNX8Q9Y5X2 465 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SPEGQ15772 3267 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 SPTBP11277 2137 aa13.05□□□□□ -0.32
PTPRF-202ENST00000372405 ASXL3Q9C0F0 2248 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 RNF103-CHMP3A0A140T963 221 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 C7orf72A4D263 438 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 PDLIM1O00151 329 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 UPK1AO00322 258 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 ACOX3O15254 700 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 C9P02748 559 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 GIMD1P0DJR0 217 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 FCGR1AP12314 374 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 KDELR2P33947 212 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 PTGER1P34995 402 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 CHI3L1P36222 383 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-202ENST00000372405 CHRNB3Q05901 458 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 TGM3Q08188 693 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 BNIP3Q12983 259 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 VEZF1Q14119 521 aa13.04□□□□□ -0.32
PTPRF-202ENST00000372405 SIM2Q14190 667 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms