RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 HS3ST2Q9Y278 367 aa15.19■□□□□ 0.02
HMGA1-202ENST00000347617 LSM2Q9Y333 95 aaKnown RBP15.19■□□□□ 0.02
HMGA1-202ENST00000347617 ZSCAN5BA6NJL1 495 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 SOCS5O75159 536 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 CA3P07451 260 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 COX7A2P14406 83 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 ITGALP20701 1170 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 HMGCLP35914 325 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 HNMTP50135 292 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 HMGA2P52926 109 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 WNT3P56703 355 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 SPIBQ01892 262 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 MLLT11Q13015 90 aaPredicted RBP15.18■□□□□ 0.02
HMGA1-202ENST00000347617 C1DQ13901 141 aaKnown RBP15.18■□□□□ 0.02
HMGA1-202ENST00000347617 TAB1Q15750 504 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 CPSF6Q16630 551 aaKnown RBP eCLIP15.18■□□□□ 0.02
HMGA1-202ENST00000347617 UGT8Q16880 541 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 Q5BKY6 102 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 DDI2Q5TDH0 399 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 PLET1Q6UQ28 207 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 LINGO4Q6UY18 593 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 Q6ZPB1 254 aaPredicted RBP15.18■□□□□ 0.02
HMGA1-202ENST00000347617 PTCHD4Q6ZW05 846 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 SERPINA9Q86WD7 417 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 SPPL2AQ8TCT8 520 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 ELMO1Q92556 727 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 IRF7Q92985 503 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 SLC25A46Q96AG3 418 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 COQ8BQ96D53 544 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 EGLN2Q96KS0 407 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 BARHL1Q9BZE3 327 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 SLC25A19Q9HC21 320 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 KCTD5Q9NXV2 234 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 ZNF282Q9UDV7 671 aaPredicted RBP15.18■□□□□ 0.02
HMGA1-202ENST00000347617 NUP50Q9UKX7 468 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 FZD4Q9ULV1 537 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 RUVBL1Q9Y265 456 aaKnown RBP15.18■□□□□ 0.02
HMGA1-202ENST00000347617 HCFC2Q9Y5Z7 792 aa15.18■□□□□ 0.02
HMGA1-202ENST00000347617 NOTCH4Q99466 2003 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 TFECO14948 347 aaPredicted RBP15.17■□□□□ 0.02
HMGA1-202ENST00000347617 SLC25A14O95258 325 aaPredicted RBP15.17■□□□□ 0.02
HMGA1-202ENST00000347617 MYOGP15173 224 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 TACR1P25103 407 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 HLA-FP30511 346 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 GDF5P43026 501 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 VASPP50552 380 aaPredicted RBP15.17■□□□□ 0.02
HMGA1-202ENST00000347617 CYP4F2P78329 520 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 IKZF1Q13422 519 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 GPR19Q15760 415 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 TPGS1Q6ZTW0 290 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 CAMKMTQ7Z624 323 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 KIAA0907Q7Z7F0 614 aaPredicted RBP15.17■□□□□ 0.02
HMGA1-202ENST00000347617 LAX1Q8IWV1 398 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 DUSP18Q8NEJ0 188 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 OR5H6Q8NGV6 325 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 DEDD2Q8WXF8 326 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 SNAPC3Q92966 411 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 TMEM80Q96HE8 168 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 FYTTD1Q96QD9 318 aaKnown RBP15.17■□□□□ 0.02
HMGA1-202ENST00000347617 GPR63Q9BZJ6 419 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 C11orf54Q9H0W9 315 aaPredicted RBP15.17■□□□□ 0.02
HMGA1-202ENST00000347617 MMP28Q9H239 520 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 SPHK2Q9NRA0 654 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 VPS4AQ9UN37 437 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 CCL26Q9Y258 94 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 PCDHGC4Q9Y5F7 938 aa15.17■□□□□ 0.02
HMGA1-202ENST00000347617 TRBV5-4A0A0C4DH59 114 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 A0A1W2PQ72 361 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 FABP12A6NFH5 140 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 UGDHO60701 494 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 CPNE3O75131 537 aaKnown RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 CPSF4O95639 269 aaKnown RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 CSF3P09919 207 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 ACADMP11310 421 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 CRYBB2P43320 205 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 MAP2K3P46734 347 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 SPHARQ15513 63 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 EXOC3L2Q2M3D2 409 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 GPR33Q49SQ1 333 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 C9orf50Q5SZB4 431 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 ZNF782Q6ZMW2 699 aaPredicted RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 DPY19L3Q6ZPD9 716 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 GRASPQ7Z6J2 395 aaPredicted RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 SLC30A8Q8IWU4 369 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 ADGRG2Q8IZP9 1017 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 PROKR2Q8NFJ6 384 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 DNAJA4Q8WW22 397 aaPredicted RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 GEMIN6Q8WXD5 167 aaKnown RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 CDCA3Q99618 268 aaPredicted RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 COQ7Q99807 217 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 ZNF717Q9BY31 904 aaPredicted RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 BPIFA1Q9NP55 256 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 FTSJ1Q9UET6 329 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 NDOR1Q9UHB4 597 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 PRELID1Q9Y255 219 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 FCF1Q9Y324 198 aaKnown RBP15.16■□□□□ 0.02
HMGA1-202ENST00000347617 A0A0G2JMP0 313 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 A0A1W2PQ67 120 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 C12orf71A8MTZ7 269 aa15.16■□□□□ 0.02
HMGA1-202ENST00000347617 CYP7B1O75881 506 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms