RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ZNF419Q96HQ0 510 aaPredicted RBP13.77□□□□□ -0.2
COL7A1-201ENST00000328333 DPEP2Q9H4A9 486 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 FBXW11Q9UKB1 542 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 MTCL1Q9Y4B5 1905 aaKnown RBP13.77□□□□□ -0.2
COL7A1-201ENST00000328333 A8MT66 165 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 CSF2P04141 144 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 IRF5Q13568 498 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 TIGARQ9NQ88 270 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 TBC1D3DA0A087WVF3 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3IA0A087WXS9 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3EA0A087X179 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3KA0A087X1G2 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3FA6NER0 549 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3LB9A6J9 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3HP0C7X1 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 CORO1AP31146 461 aaKnown RBP13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3GQ6DHY5 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3CQ6IPX1 549 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 DCP2Q8IU60 420 aaKnown RBP13.77□□□□□ -0.21
COL7A1-201ENST00000328333 RASGRP3Q8IV61 690 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 ZDHHC14Q8IZN3 488 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TBC1D3Q8IZP1 549 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-201ENST00000328333 CENPOQ9BU64 300 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 PLEKHA3Q9HB20 300 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 CPQQ9Y646 472 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 SPATA31C1P0DKV0 1188 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 RAB11BQ15907 218 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 MINDY1Q8N5J2 469 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 NAT16Q8N8M0 369 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 ANKRD60Q9BZ19 345 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 CELF2O95319 508 aaKnown RBP13.77□□□□□ -0.21
COL7A1-201ENST00000328333 PIM1P11309 404 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-201ENST00000328333 NPRL3Q12980 569 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 CILP2Q8IUL8 1156 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TMEM234Q8WY98 164 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 HS6ST2Q96MM7 605 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 HYKKA2RU49 373 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 MEGF11A6BM72 1044 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 AGAP14A8MT82 685 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 BMP2P12643 396 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 ASPAP45381 313 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 TAS2R39P59534 338 aa13.77□□□□□ -0.21
COL7A1-201ENST00000328333 BHMG1C9JSJ3 638 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 TGFB1I1O43294 461 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 PQBP1O60828 265 aaKnown RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 CRTAPO75718 401 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 OR8U9P0C7N5 309 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 EBLN1P0CF75 366 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 GALEQ14376 348 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SPHARQ15513 63 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 ACOT7O00154 380 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 HRH2P25021 359 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SELENOVP59797 346 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 C6orf89Q6UWU4 347 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 DPCDQ9BVM2 203 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 NMUR1Q9HB89 426 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 DDX4Q9NQI0 724 aaKnown RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 TUBG2Q9NRH3 451 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 DNAJC27Q9NZQ0 273 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 EPOP01588 193 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 ATXN7L3Q14CW9 347 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 TLDC1Q6P9B6 456 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 RGL4Q8IZJ4 473 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 LAMB1P07942 1786 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 PTPRZ1P23471 2315 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 PLGP00747 810 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 BCHEP06276 602 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF30P17039 623 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 CTHP32929 405 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SLC8B1Q6J4K2 584 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 PHTF2Q8N3S3 785 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SYT14Q8NB59 555 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 NPLQ9BXD5 320 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 ATG5Q9H1Y0 275 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 FBXL3Q9UKT7 428 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 J3QR89 54 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 CELP19835 753 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 HTR1EP28566 365 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SLC36A3Q495N2 470 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 PRAMEF14Q5SWL7 426 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 NDUFAF5Q5TEU4 345 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 MMAAQ8IVH4 418 aaKnown RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 OR7G1Q8NGA0 311 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 ERLEC1Q96DZ1 483 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 ADAM7Q9H2U9 754 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 CLVS2Q5SYC1 327 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 NIPAL3Q6P499 406 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 FAM109AQ8N4B1 249 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 GRHL3Q8TE85 626 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 DGAT2Q96PD7 388 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 RGPD1P0DJD0 1748 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 MMP20O60882 483 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 CHRNB1P11230 501 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 TACR2P21452 398 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SF3A2Q15428 464 aaKnown RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 MEP1AQ16819 746 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SIMC1Q8NDZ2 872 aa13.76□□□□□ -0.21
COL7A1-201ENST00000328333 SETD7Q8WTS6 366 aaKnown RBP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.76□□□□□ -0.21
COL7A1-201ENST00000328333 GNG13Q9P2W3 67 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms