RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GPR142Q7Z601 462 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 OR10Q1Q8NGQ4 319 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 OR6N1Q8NGY5 312 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 PHOSPHO1Q8TCT1 267 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ZDHHC1Q8WTX9 485 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 FUNDC2Q9BWH2 189 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 MRIQ9BWK5 157 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ACTL8Q9H568 366 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 IL36AQ9UHA7 158 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 PCTPQ9UKL6 214 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 TRAPPC13A5PLN9 417 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF850A8MQ14 1090 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 CNTN5O94779 1100 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ATP1B2P14415 290 aaPredicted RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF763Q0D2J5 394 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 GINS1Q14691 196 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 OR9I1Q8NGQ6 314 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 OR6N2Q8NGY6 317 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 NTAN1Q96AB6 310 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 LRCH3Q96II8 777 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 RPS10P5Q9NQ39 176 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 NME7Q9Y5B8 376 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF254O75437 659 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 DOHHQ9BU89 302 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 LCHNA4D1U4 455 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 GOSR2O14653 212 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 UCHL1P09936 223 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CRHR2Q13324 411 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 PCBP2Q15366 365 aaKnown RBP eCLIP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 DACT2Q5SW24 774 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF611Q8N823 705 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 AVL9Q8NBF6 648 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CHDHQ8NE62 594 aaPredicted RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 POLDIP3Q9BY77 421 aaKnown RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 TMEM100Q9NV29 134 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 ZNF175Q9Y473 711 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 TRBV2A0A0J9YWF9 115 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 A0A1W2PPL8 197 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 TGM6O95932 706 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 AKR1C4P17516 323 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SPHARQ15513 63 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 C14orf28Q4W4Y0 310 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SPANXN4Q5MJ08 99 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 PRAMEF19Q5SWL8 479 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 DCST2Q5T1A1 773 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 OR10T2Q8NGX3 314 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CCM2LQ9NUG4 571 aaPredicted RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 A0A0G2JN53 185 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 IRF6O14896 467 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 DGKEP52429 567 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 INHBEP58166 350 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 LILRA4P59901 499 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SSX2Q16385 188 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 FTMTQ8N4E7 242 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 DENND1AQ8TEH3 1009 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 GLYATL2Q8WU03 294 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 RELTQ969Z4 430 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 ACDQ96AP0 544 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MGLLQ99685 303 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MAGIXQ9H6Y5 334 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MAN2C1Q9NTJ4 1040 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 A0A0A6YYH2 397 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 A6NJ64 397 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 C9J4A7 227 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 C6orf47O95873 294 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MT-CO2P00403 227 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 OAS1P00973 400 aaKnown RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 NANOGP8Q6NSW7 305 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 TMEM151AQ8N4L1 468 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SLC35B2Q8TB61 432 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 KIAA1191Q96A73 305 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SNX27Q96L92 541 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SECISBP2Q96T21 854 aaKnown RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CACNG6Q9BXT2 260 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 NANOGQ9H9S0 305 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 GALPQ9UBC7 116 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 IRAK2O43187 625 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 PIM1P11309 404 aaPredicted RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 SOX2P48431 317 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MYLK3Q32MK0 819 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 FAM83HQ6ZRV2 1179 aaPredicted RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 GPR149Q86SP6 731 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 OR51D1Q8NGF3 324 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 OR13C4Q8NGS5 318 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 CDKN2AIPNLQ96HQ2 116 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 NIFKQ9BYG3 293 aaKnown RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 AP1M2Q9Y6Q5 423 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 DIP2BQ9P265 1576 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 OR51F1A6NGY5 319 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 DLDP09622 509 aaKnown RBP13.36□□□□□ -0.27
CSPG4-201ENST00000308508 HK3P52790 923 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 NRLP54845 237 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 KCNC3Q14003 757 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 BCL2L15Q5TBC7 163 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 METTL11BQ5VVY1 283 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 OR8K5Q8NH50 307 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 FGFBP2Q9BYJ0 223 aa13.36□□□□□ -0.27
CSPG4-201ENST00000308508 MTFR1LQ9H019 292 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms