RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 C10orf62Q5T681 223 aaPredicted RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 C18orf63Q68DL7 685 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 CROCCP2Q86T23 111 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 NUDT13Q86X67 352 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 SCUBE1Q8IWY4 988 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 KBTBD2Q8IY47 623 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ZNF595Q8IYB9 648 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ADAMTS18Q8TE60 1221 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 PGM2Q96G03 612 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 PKNOX2Q96KN3 472 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 TUBB6Q9BUF5 446 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 LHPPQ9H008 270 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 DDX31Q9H8H2 851 aaKnown RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 ZBTB20Q9HC78 741 aaPredicted RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 MRPS33Q9Y291 106 aaKnown RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 ATG4BQ9Y4P1 393 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 MMACHCQ9Y4U1 282 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ZNF462Q96JM2 2506 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 TCRBV16S1A1N1A0A5B0 115 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 WDR91A4D1P6 747 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 WASHC1A8K0Z3 465 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 CLDN4O14493 209 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 KLK1P06870 262 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 CHRNGP07510 517 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 BPGMP07738 259 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 PRR35P0CG20 571 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 ITGAMP11215 1152 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 TPP2P29144 1249 aaPredicted RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 ARFIP1P53367 373 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 HSD17B7P56937 341 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 HMGCS1Q01581 520 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 GALNT1Q10472 559 aaPredicted RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 TBL3Q12788 808 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 RCN2Q14257 317 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 BTBD16Q32M84 506 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 CLEC6AQ6EIG7 209 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 MRM1Q6IN84 353 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 CYP20A1Q6UW02 462 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 ATG14Q6ZNE5 492 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 COMMD6Q7Z4G1 85 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 CUZD1Q86UP6 607 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 GPR180Q86V85 440 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 OR4N5Q8IXE1 308 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 METTL4Q8N3J2 472 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 SIRT6Q8N6T7 355 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 BRIX1Q8TDN6 353 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 UCN3Q969E3 161 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 LPAR4Q99677 370 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 SMAD5Q99717 465 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 ACPTQ9BZG2 426 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 BRF2Q9HAW0 419 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 TMBIM4Q9HC24 238 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 SSU72Q9NP77 194 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 KCNK9Q9NPC2 374 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 PNO1Q9NRX1 252 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 G3BP2Q9UN86 482 aaKnown RBP12.53□□□□□ -0.4
VPS28-201ENST00000292510 FIS1Q9Y3D6 152 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 ASB4Q9Y574 426 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 ACTL7BQ9Y614 415 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 SPACA6W5XKT8 324 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 DOCK10Q96BY6 2186 aa12.53□□□□□ -0.4
VPS28-201ENST00000292510 A0A1W2PR48 441 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 ARHGAP10A1A4S6 786 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 GLOD5A6NK44 160 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 PROM1O43490 865 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 CTNSO60931 367 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 CRCPO75575 148 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 SERPINA7P05543 415 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 FAM58BPP0C7Q3 252 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 ARRB2P32121 409 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 CD97P48960 835 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 NAA20P61599 178 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 TNFRSF17Q02223 184 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 ASPHQ12797 758 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 CSTF3Q12996 717 aaKnown RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 VWA5B1Q5TIE3 1220 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 IRAK1BP1Q5VVH5 260 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 B3GNTL1Q67FW5 361 aaPredicted RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 PLAG1Q6DJT9 500 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 C1orf52Q8N6N3 182 aaKnown RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 PSMF1Q92530 271 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 ANKRD9Q96BM1 317 aaPredicted RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 APIPQ96GX9 242 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 CNDP1Q96KN2 507 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 MFRPQ9BY79 579 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 RPF2Q9H7B2 306 aaKnown RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 LYARQ9NX58 379 aaKnown RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 TEX10Q9NXF1 929 aaPredicted RBP12.52□□□□□ -0.41
VPS28-201ENST00000292510 AHSPQ9NZD4 102 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 PTGFRNQ9P2B2 879 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 VPS29Q9UBQ0 182 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 PHF11Q9UIL8 331 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 ZNF451Q9Y4E5 1061 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 PTGDR2Q9Y5Y4 395 aa12.52□□□□□ -0.41
VPS28-201ENST00000292510 TMEM233B4DJY2 109 aa12.51□□□□□ -0.41
VPS28-201ENST00000292510 FGF17O60258 216 aa12.51□□□□□ -0.41
VPS28-201ENST00000292510 NPHS1O60500 1241 aa12.51□□□□□ -0.41
VPS28-201ENST00000292510 AIFM1O95831 613 aa12.51□□□□□ -0.41
VPS28-201ENST00000292510 HSD3B1P14060 373 aa12.51□□□□□ -0.41
VPS28-201ENST00000292510 H2AFXP16104 143 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms