RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 CHSY3Q70JA7 882 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 RPS27LQ71UM5 84 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 TRMT10CQ7L0Y3 403 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 RPS19BP1Q86WX3 136 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 SLC5A8Q8N695 610 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 L3MBTL4Q8NA19 623 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 SRFBP1Q8NEF9 429 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 ARMC2Q8NEN0 867 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 OR52B6Q8NGF0 335 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 WDR20Q8TBZ3 569 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 ADAMTS18Q8TE60 1221 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 CMTM7Q96FZ5 175 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 CDK15Q96Q40 435 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 ZNF717Q9BY31 904 aaPredicted RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 NOL11Q9H8H0 719 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 LYRM4Q9HD34 91 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 PCTPQ9UKL6 214 aa13.47□□□□□ -0.25
HMGN3-201ENST00000275036 PPIEQ9UNP9 301 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 TNPO3Q9Y5L0 923 aaKnown RBP13.47□□□□□ -0.25
HMGN3-201ENST00000275036 A0A1B0GTL3 188 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 CLDN4O14493 209 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 PLPP1O14494 284 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 PRKNO60260 465 aaPredicted RBP13.46□□□□□ -0.25
HMGN3-201ENST00000275036 UGDHO60701 494 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 CTNSO60931 367 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 LDB3O75112 727 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 NEURL1O76050 574 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 RASAL1O95294 804 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 STSP08842 583 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 SNRPAP09012 282 aaKnown RBP13.46□□□□□ -0.25
HMGN3-201ENST00000275036 SERPINB1P30740 379 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 PIK3CBP42338 1070 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 SSR2P43308 183 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 PIK3CGP48736 1102 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 NEK2P51955 445 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 MLF1P58340 268 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 TAS2R50P59544 299 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 TERF2Q15554 542 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 OR1C1Q15619 314 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 TSNAXIP1Q2TAA8 658 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 AP5B1Q2VPB7 878 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 C1QL3Q5VWW1 255 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 ZNF787Q6DD87 383 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 OR4C11Q6IEV9 310 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 METTL2BQ6P1Q9 378 aaKnown RBP13.46□□□□□ -0.25
HMGN3-201ENST00000275036 MAMDC2Q7Z304 686 aaPredicted RBP13.46□□□□□ -0.25
HMGN3-201ENST00000275036 ZNF227Q86WZ6 799 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 LGI4Q8N135 537 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 ARMC10Q8N2F6 343 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 B3GNT7Q8NFL0 401 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 SCMH1Q96GD3 660 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 UTP23Q9BRU9 249 aaKnown RBP13.46□□□□□ -0.25
HMGN3-201ENST00000275036 ROGDIQ9GZN7 287 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 PRM3Q9NNZ6 103 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 KLHL1Q9NR64 748 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 ABI3Q9P2A4 366 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 ADGRE2Q9UHX3 823 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 FBXW2Q9UKT8 454 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 MRPS33Q9Y291 106 aaKnown RBP13.46□□□□□ -0.25
HMGN3-201ENST00000275036 PCDHGA11Q9Y5H2 935 aa13.46□□□□□ -0.25
HMGN3-201ENST00000275036 TEX15Q9BXT5 2789 aa13.46□□□□□ -0.26
HMGN3-201ENST00000275036 CELSR2Q9HCU4 2923 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 TRBV11-1A0A0K0K1C0 115 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 STX16-NPEPL1H3BU86 382 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 PPP6CO00743 305 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 STX16O14662 325 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 ID2Q02363 134 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 TRAF3Q13114 568 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 SLC29A2Q14542 456 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 ZRSR2Q15696 482 aaKnown RBP13.45□□□□□ -0.26
HMGN3-201ENST00000275036 TIFABQ6ZNK6 161 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 SUN3Q8TAQ9 357 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 THAP3Q8WTV1 239 aaPredicted RBP13.45□□□□□ -0.26
HMGN3-201ENST00000275036 PTPMT1Q8WUK0 201 aaPredicted RBP13.45□□□□□ -0.26
HMGN3-201ENST00000275036 NCLNQ969V3 563 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 RGMAQ96B86 450 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 ANKRD9Q96BM1 317 aaPredicted RBP13.45□□□□□ -0.26
HMGN3-201ENST00000275036 MRPL57Q9BQC6 102 aaKnown RBP13.45□□□□□ -0.26
HMGN3-201ENST00000275036 ALOXE3Q9BYJ1 711 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 MRPL46Q9H2W6 279 aaKnown RBP13.45□□□□□ -0.26
HMGN3-201ENST00000275036 L2HGDHQ9H9P8 463 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 ADAP2Q9NPF8 381 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 PCDHGB6Q9Y5F9 930 aa13.45□□□□□ -0.26
HMGN3-201ENST00000275036 ZNF407Q9C0G0 2248 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 TMEM200CA6NKL6 621 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 A8MT66 165 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 FGF17O60258 216 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 SMIM24O75264 130 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 EEDO75530 441 aaKnown RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 PRKRAO75569 313 aaKnown RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 UNC5CO95185 931 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 CLDN9O95484 217 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 RPS17P08708 135 aaKnown RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 CPN2P22792 545 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 BSGP35613 385 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 CLCN2P51788 898 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 CCNG1P51959 295 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 RAP1GDS1P52306 607 aa13.44□□□□□ -0.26
HMGN3-201ENST00000275036 HNRNPH2P55795 449 aaKnown RBP13.44□□□□□ -0.26
HMGN3-201ENST00000275036 OC90Q02509 493 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms