RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 RNF112Q9ULX5 631 aa9.07□□□□□ -0.96
VPS41-201ENST00000265745 DAPP1Q9UN19 280 aa9.07□□□□□ -0.96
VPS41-201ENST00000265745 CELSR2Q9HCU4 2923 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 TRBV11-1A0A0K0K1C0 115 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 TMEM200CA6NKL6 621 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 FCHO1O14526 889 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 CCNT2O60583 730 aaKnown RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 S100BP04271 92 aaPredicted RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 PRF1P14222 555 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 ZNF24P17028 368 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 TFEBP19484 476 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 CERS1P27544 350 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 GRNP28799 593 aaKnown RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 CRABP2P29373 138 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 TGM3Q08188 693 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 LAPTM5Q13571 262 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 RCN2Q14257 317 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 EFTUD2Q15029 972 aaKnown RBP eCLIP9.06□□□□□ -0.963e-6■■■□□ 18.3
VPS41-201ENST00000265745 HIST2H2ACQ16777 129 aaPredicted RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 TMEM35AQ53FP2 167 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 PAGE2BQ5JRK9 111 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 HIST2H2AA3Q6FI13 130 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 XKRXQ6PP77 449 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 SYT10Q6XYQ8 523 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 RAPH1Q70E73 1250 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 LRRC70Q7Z2Q7 622 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 ZNF572Q7Z3I7 529 aaPredicted RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 CLNKQ7Z7G1 428 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 CMC1Q7Z7K0 106 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 CCDC25Q86WR0 208 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 C17orf53Q8N3J3 647 aaPredicted RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 TMEM156Q8N614 296 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 CPSF7Q8N684 471 aaKnown RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 FAM47BQ8NA70 645 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 FBF1Q8TES7 1133 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 ZNF473Q8WTR7 871 aaKnown RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 UBE2E3Q969T4 207 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 NCLNQ969V3 563 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 TMEM125Q96AQ2 219 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 VMP1Q96GC9 406 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 MAGED4Q96JG8 741 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 KCNC2Q96PR1 638 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 ATOH8Q96SQ7 321 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 CSF3RQ99062 836 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 RAB17Q9H0T7 212 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 NMRAL1Q9HBL8 299 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 LYRM4Q9HD34 91 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 ADAP2Q9NPF8 381 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 VTI1BQ9UEU0 232 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 FBXW2Q9UKT8 454 aa9.06□□□□□ -0.96
VPS41-201ENST00000265745 MRPS33Q9Y291 106 aaKnown RBP9.06□□□□□ -0.96
VPS41-201ENST00000265745 ARHGAP10A1A4S6 786 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 HMX2A2RU54 273 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 KLRC4-KLRK1H3BQV0 150 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 PEX1O43933 1283 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 PRKNO60260 465 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 KERAO60938 352 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ITGA10O75578 1167 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ZFAND5O76080 213 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 LTA4HP09960 611 aaKnown RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 ESRRAP11474 423 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 MTHFD2P13995 350 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 AGAP20933 346 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ATP5A1P25705 553 aaKnown RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 HTR1EP28566 365 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 STX2P32856 288 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 MSH2P43246 934 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 WDR4P57081 412 aaKnown RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 ADORA2A-AS1P86434 159 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 NAB1Q13506 487 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ELAVL1Q15717 326 aaKnown RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 ZNF630Q2M218 657 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 ZNF793Q6ZN11 406 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 BNC2Q6ZN30 1099 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 C16orf47Q6ZP98 133 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 MDGA2Q7Z553 956 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 FGD2Q7Z6J4 655 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 TBC1D1Q86TI0 1168 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 TREML1Q86YW5 311 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 SULF2Q8IWU5 870 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 LAS2Q8IYD9 372 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 GHDCQ8N2G8 530 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 TMEM132CQ8N3T6 1108 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ACOT4Q8N9L9 421 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 POGLUT1Q8NBL1 392 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 SRFBP1Q8NEF9 429 aaKnown RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 PTPMT1Q8WUK0 201 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 UBTD2Q8WUN7 234 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 SREK1Q8WXA9 508 aaKnown RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 EXT2Q93063 718 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 NXNL1Q96CM4 212 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 TBCDQ9BTW9 1192 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 MS4A8Q9BY19 250 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ALOXE3Q9BYJ1 711 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 ROGDIQ9GZN7 287 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 COPS7BQ9H9Q2 264 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 CHST11Q9NPF2 352 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 NUDT4Q9NZJ9 180 aa9.05□□□□□ -0.96
VPS41-201ENST00000265745 KLF13Q9Y2Y9 288 aaPredicted RBP9.05□□□□□ -0.96
VPS41-201ENST00000265745 YARS2Q9Y2Z4 477 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms