RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 INMT-MINDY4F8WBC2 141 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 DVL2O14641 736 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 HOXB9P17482 250 aaPredicted RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 POLR2CP19387 275 aaPredicted RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 PRPS1L1P21108 318 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 SCARB2Q14108 478 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 FNDC1Q4ZHG4 1894 aaPredicted RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 TSPAN33Q86UF1 283 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 OR4N4Q8N0Y3 316 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 TMEM145Q8NBT3 493 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CEP76Q8TAP6 659 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 C17orf62Q9BQA9 187 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 NTMT1Q9BV86 223 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 TAPBPLQ9BX59 468 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 SLC32A1Q9H598 525 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 IL26Q9NPH9 171 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 ACER3Q9NUN7 267 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 IL17CQ9P0M4 197 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 SCML1Q9UN30 329 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 AKAP8O43823 692 aaKnown RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 SCN2BO60939 215 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 C6orf47O95873 294 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 C1QBP02746 253 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 HIST1H2AGP0C0S8 130 aaPredicted RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 HIST1H2ADP20671 130 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 SOX18P35713 384 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CHI3L1P36222 383 aaPredicted RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 ETV5P41161 510 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 ETV1P50549 477 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 RHOAP61586 193 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 RBBP4Q09028 425 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 C2orf80Q0P641 193 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 EIF4HQ15056 248 aaKnown RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 ERICH5Q6P6B1 374 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CD300LGQ6UXG3 332 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CASP12Q6UXS9 341 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 IDO2Q6ZQW0 420 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 LHFPL3Q86UP9 236 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 PLCZ1Q86YW0 608 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 HJURPQ8NCD3 748 aaPredicted RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 KLHL6Q8WZ60 621 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 SLC25A46Q96AG3 418 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 TMEM80Q96HE8 168 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 HIST1H2AHQ96KK5 128 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 PKMYT1Q99640 499 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 HIST1H2AJQ99878 128 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 H2AFJQ9BTM1 129 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CDCA4Q9BXL8 241 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 PRKAR1AP10644 381 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CPN2P22792 545 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CLCN4P51793 760 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 HBA1P69905 142 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CDC42EP1Q00587 391 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 ZNF91Q05481 1191 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 BTN1A1Q13410 526 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 C1DQ13901 141 aaKnown RBP13.73□□□□□ -0.21
SDC1-201ENST00000254351 CARNMT1Q8N4J0 409 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.73□□□□□ -0.211e-6■■□□□ 13.5
SDC1-201ENST00000254351 ANKRA2Q9H9E1 313 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 SEC14L4Q9UDX3 406 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 RWDD3Q9Y3V2 267 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 TRBC2A0A5B9 178 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 CSTF2P33240 577 aaKnown RBP eCLIP13.72□□□□□ -0.21
SDC1-201ENST00000254351 SRP9P49458 86 aaKnown RBP13.72□□□□□ -0.21
SDC1-201ENST00000254351 YBEYP58557 167 aaPredicted RBP13.72□□□□□ -0.21
SDC1-201ENST00000254351 RRAS2P62070 204 aaPredicted RBP13.72□□□□□ -0.21
SDC1-201ENST00000254351 NFATC2Q13469 925 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 SUZ12Q15022 739 aaKnown RBP13.72□□□□□ -0.21
SDC1-201ENST00000254351 UNC5DQ6UXZ4 953 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 COMMD7Q86VX2 200 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 GALNT6Q8NCL4 622 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 TESCQ96BS2 214 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 SIPA1Q96FS4 1042 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 P2RY13Q9BPV8 354 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 SLC35A5Q9BS91 424 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 KATNB1Q9BVA0 655 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 ZC4H2Q9NQZ6 224 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 GPATCH2Q9NW75 528 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 IGLV3-10A0A075B6K4 115 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 GJB5O95377 273 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 PAHP00439 452 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 MYCP01106 439 aaPredicted RBP13.72□□□□□ -0.21
SDC1-201ENST00000254351 ZNF81P51508 661 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 ALG1LQ6GMV1 187 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 SLC30A8Q8IWU4 369 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 RBFAQ8N0V3 343 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 MMP21Q8N119 569 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 HHIPL1Q96JK4 782 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 ADAM2Q99965 735 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 SLC29A3Q9BZD2 475 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 ZFYVE1Q9HBF4 777 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 RIMKLBQ9ULI2 386 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 ABT1Q9ULW3 272 aaKnown RBP13.72□□□□□ -0.21
SDC1-201ENST00000254351 CKAP5Q14008 2032 aa13.72□□□□□ -0.21
SDC1-201ENST00000254351 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.71□□□□□ -0.21
SDC1-201ENST00000254351 HYKKA2RU49 373 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 GLULP15104 373 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 NNMTP40261 264 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 GSTM5P46439 218 aa13.71□□□□□ -0.21
SDC1-201ENST00000254351 CSNK1DP48730 415 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms