RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TOR1AO14656 332 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GRID2O43424 1007 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CDC123O75794 336 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 C8BP07358 591 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FCGR2AP12318 317 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LAMP2P13473 410 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FNTBP49356 437 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PLA2G16P53816 162 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MRPS10P82664 201 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CDK16Q00536 496 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PMS2P3Q13401 168 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CTC1Q2NKJ3 1217 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC36A3Q495N2 470 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RNF220Q5VTB9 566 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RTL6Q6ICC9 239 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RGS7BPQ6MZT1 257 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 METTL7BQ6UX53 244 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZBTB46Q86UZ6 589 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RNF175Q8N4F7 328 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 IQCF1Q8N6M8 205 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF417Q8TAU3 575 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF587Q96SQ5 575 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 HCAR1Q9BXC0 346 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CD244Q9BZW8 370 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GCN1Q92616 2671 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 VWA8A3KMH1 1905 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 A0A0B4J203 849 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 K7EPI3 171 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LRRTM2O43300 516 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ENSAO43768 121 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MAGP20916 626 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DUSP1P28562 367 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 AGTR2P50052 363 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PAFAH1B2P68402 229 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TLE4Q04727 773 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 AGTRAPQ6RW13 159 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FAM198BQ6UWH4 519 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OTOP2Q7RTS6 562 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TECPR1Q7Z6L1 1165 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC22A16Q86VW1 577 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ANKRD46Q86W74 232 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CPNE9Q8IYJ1 553 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PHTF2Q8N3S3 785 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SEMA6DQ8NFY4 1073 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CNDP2Q96KP4 475 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RPL10LQ96L21 214 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DNTTIP1Q9H147 329 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ESRP2Q9H6T0 727 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MOB1AQ9H8S9 216 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SSU72Q9NP77 194 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TAS2R10Q9NYW0 307 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ACTR10Q9NZ32 417 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 COPS3Q9UNS2 423 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NPIPA5A0A0B4J1W7 369 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 A0A0D9SFI3 127 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC12A8A0AV02 714 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PMS2P1A4D2B8 440 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TPPPO94811 219 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 IFNA5P01569 189 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PROCP04070 461 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 INSRRP14616 1297 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SELPP16109 830 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GMPSP49915 693 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ADPRHP54922 357 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TBX4P57082 545 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FKBP1AP62942 108 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PMPCAQ10713 525 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RAB35Q15286 201 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CLVS2Q5SYC1 327 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 C9orf64Q5T6V5 341 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 KCTD11Q693B1 232 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF621Q6ZSS3 439 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR4N5Q8IXE1 308 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD4AQ8N468 514 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NKAPQ8N5F7 415 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FNDC5Q8NAU1 212 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CHST4Q8NCG5 386 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR7G1Q8NGA0 311 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR2AP1Q8NGE2 309 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FNDC8Q8TC99 324 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF419Q96HQ0 510 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MAPKAP1Q9BPZ7 522 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FUZQ9BT04 418 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ASB8Q9H765 288 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MID1IP1Q9NPA3 183 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DDIT4Q9NX09 232 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TAS2R9Q9NYW1 312 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PRODH2Q9UF12 536 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RARRES3Q9UL19 164 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 BOKQ9UMX3 212 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 C20orf202A1L168 122 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR6C70A6NIJ9 312 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 VSTM2BA6NLU5 285 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 A8MV72 311 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SPATA31C2B4DYI2 1134 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 EREGO14944 169 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 KLRC4O43908 158 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ONECUT3O60422 494 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RNH1P13489 461 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GDI1P31150 447 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms