RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 UGCGQ16739 394 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 HYAL4Q2M3T9 481 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 KRT80Q6KB66 452 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 SLC43A2Q8N370 569 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 ZNF781Q8N8C0 355 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 OR6F1Q8NGZ6 308 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 MRPS27Q92552 414 aaKnown RBP2.8□□□□□ -1.96
CD44-239ENST00000639002 SLC35C1Q96A29 364 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 ANKRD27Q96NW4 1050 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 TSSK2Q96PF2 358 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 NUDT16L1Q9BRJ7 211 aaKnown RBP2.8□□□□□ -1.96
CD44-239ENST00000639002 CHMP4AQ9BY43 222 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 ZBP1Q9H171 429 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 ZNF275Q9NSD4 429 aaPredicted RBP2.8□□□□□ -1.96
CD44-239ENST00000639002 VNN3Q9NY84 501 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 PCDHGA1Q9Y5H4 931 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 KIAA1217Q5T5P2 1943 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 A8MXE2 369 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 CCDC188H7C350 402 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 ACSL4O60488 711 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 MOCS2O96007 188 aaPredicted RBP2.79□□□□□ -1.96
CD44-239ENST00000639002 SP9P0CG40 484 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 KRT3P12035 628 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 SRD5A2P31213 254 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 SLC1A6P48664 564 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 HMGCS2P54868 508 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 PRPF4BQ13523 1007 aaKnown RBP2.79□□□□□ -1.96
CD44-239ENST00000639002 COG2Q14746 738 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 C9orf129Q5T035 196 aaKnown RBP2.79□□□□□ -1.96
CD44-239ENST00000639002 FAM46CQ5VWP2 391 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 RMDN1Q96DB5 314 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 AK8Q96MA6 479 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 SP140LQ9H930 580 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 PLSCR3Q9NRY6 295 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 TMOD3Q9NYL9 352 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 RSPH14Q9UHP6 348 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 CLEC4EQ9ULY5 219 aa2.79□□□□□ -1.96
CD44-239ENST00000639002 HBS1LQ9Y450 684 aaKnown RBP2.79□□□□□ -1.96
CD44-239ENST00000639002 PPIP5K2O43314 1243 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 EIF5BO60841 1220 aaKnown RBP2.78□□□□□ -1.96
CD44-239ENST00000639002 GGPS1O95749 300 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 CALCAP01258 141 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 ELK1P19419 428 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 CASP2P42575 452 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 TNFRSF4P43489 277 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 OR3A1P47881 315 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 RFTN2Q52LD8 501 aaPredicted RBP2.78□□□□□ -1.96
CD44-239ENST00000639002 KRBOX4Q5JUW0 171 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 REP15Q6BDI9 236 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 RFPL4BQ6ZWI9 263 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 HEXDCQ8WVB3 486 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 PRMT1Q99873 361 aaKnown RBP2.78□□□□□ -1.96
CD44-239ENST00000639002 LMAN1LQ9HAT1 526 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 NMUR1Q9HB89 426 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 SH3GLB2Q9NR46 395 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 NOCTQ9UK39 431 aaKnown RBP2.78□□□□□ -1.96
CD44-239ENST00000639002 SNX7Q9UNH6 387 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 SH3GLB1Q9Y371 365 aa2.78□□□□□ -1.96
CD44-239ENST00000639002 WI2-2373I1.2A0A1W2PRP0 233 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 OR5H15A6NDH6 313 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 ZNF487B1APH4 448 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 FAM86B1E9PN63 330 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 SAP18O00422 153 aaKnown RBP2.77□□□□□ -1.97
CD44-239ENST00000639002 RHBDL1O75783 438 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 FAM86B2P0C5J1 330 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 SLC1A3P43003 542 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 CRKLP46109 303 aaKnown RBP2.77□□□□□ -1.97
CD44-239ENST00000639002 BRCC3P46736 316 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 RGRP47804 291 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 CAMK2DQ13557 499 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 ABRAXAS2Q15018 415 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 RPUSD3Q6P087 351 aaKnown RBP2.77□□□□□ -1.97
CD44-239ENST00000639002 PP632Q6XCG6 107 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 C11orf57Q6ZUT1 292 aaPredicted RBP2.77□□□□□ -1.97
CD44-239ENST00000639002 CCAR2Q8N163 923 aaKnown RBP2.77□□□□□ -1.97
CD44-239ENST00000639002 ZNF525Q8N782 197 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 ZNF491Q8N8L2 437 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 C8orf46Q8TAG6 207 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 U2AF1L4Q8WU68 220 aaKnown RBP2.77□□□□□ -1.97
CD44-239ENST00000639002 ST6GALNAC6Q969X2 333 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 BPIFA2Q96DR5 249 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 SIGLEC12Q96PQ1 595 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.77□□□□□ -1.97
CD44-239ENST00000639002 CCL27Q9Y4X3 112 aa2.77□□□□□ -1.97
CD44-239ENST00000639002 A0A0B4J203 849 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 TMEM129A0AVI4 362 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 SKILP12757 684 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 MDH2P40926 338 aaKnown RBP2.76□□□□□ -1.97
CD44-239ENST00000639002 GPR50Q13585 617 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 RASA2Q15283 850 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 TGIF1Q15583 401 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 HERC4Q5GLZ8 1057 aaPredicted RBP2.76□□□□□ -1.97
CD44-239ENST00000639002 TXNRD3NBQ6F5E7 133 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 ZNF530Q6P9A1 599 aaPredicted RBP2.76□□□□□ -1.97
CD44-239ENST00000639002 IGFL2Q6UWQ7 119 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 TMEM182Q6ZP80 229 aaPredicted RBP2.76□□□□□ -1.97
CD44-239ENST00000639002 NME8Q8N427 588 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 CARNMT1Q8N4J0 409 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 GPR148Q8TDV2 347 aa2.76□□□□□ -1.97
CD44-239ENST00000639002 CCM2Q9BSQ5 444 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms