RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ANKRD37Q7Z713 158 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 THOC3Q96J01 351 aaKnown RBP19.48■□□□□ 0.71
CLN3-240ENST00000631023 OXSMQ9NWU1 459 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 AHSPQ9NZD4 102 aa19.48■□□□□ 0.71
CLN3-240ENST00000631023 HEMK1Q9Y5R4 338 aaPredicted RBP19.48■□□□□ 0.71
CLN3-240ENST00000631023 K7EM74 188 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 SCELO95171 688 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 KRT6AP02538 564 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 KRT6BP04259 564 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 KRT6CP48668 564 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 NAGLUP54802 743 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 HSD17B7P56937 341 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 OR4D2P58180 307 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 BTG2P78543 158 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 PCOLCEQ15113 449 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 SFT2D3Q587I9 215 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 SGO1Q5FBB7 561 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 AGAP7PQ5VUJ5 663 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 ZNF793Q6ZN11 406 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 RIPOR1Q6ZS17 1223 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 ZNF595Q8IYB9 648 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 SELENOMQ8WWX9 145 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 IMMP1LQ96LU5 166 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 AGAP4Q96P64 663 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 LPAR4Q99677 370 aa19.47■□□□□ 0.71
CLN3-240ENST00000631023 C12orf65Q9H3J6 166 aaKnown RBP19.47■□□□□ 0.71
CLN3-240ENST00000631023 CFAP46Q8IYW2 2715 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 A0A1B0GTL3 188 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 BLACEA4D250 179 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 H3BQF6 201 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 PLPP1O14494 284 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 SEMA3DO95025 777 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 SERPINA7P05543 415 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 ENO1P06733 434 aaKnown RBP19.46■□□□□ 0.71
CLN3-240ENST00000631023 NR1D1P20393 614 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 ASPHQ12797 758 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 CEP85LQ5SZL2 805 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 LIPMQ5VYY2 423 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 PTRH1Q86Y79 214 aaKnown RBP19.46■□□□□ 0.71
CLN3-240ENST00000631023 CDYL2Q8N8U2 506 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 TEX19Q8NA77 164 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 TM9SF4Q92544 642 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 TSLPQ969D9 159 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 SLC29A3Q9BZD2 475 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 GSTO2Q9H4Y5 243 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 ZNF552Q9H707 407 aaPredicted RBP19.46■□□□□ 0.71
CLN3-240ENST00000631023 BRF2Q9HAW0 419 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 PRTFDC1Q9NRG1 225 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 NMRK1Q9NWW6 199 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 MS4A12Q9NXJ0 267 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 KCMF1Q9P0J7 381 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 ZNF225Q9UK10 706 aa19.46■□□□□ 0.71
CLN3-240ENST00000631023 IGHV3-20A0A0C4DH32 117 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 SYNDIG1LA6NDD5 238 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 CYR61O00622 381 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 DPM1O60762 260 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 SPAG7O75391 227 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 SEC24DO94855 1032 aaPredicted RBP19.45■□□□□ 0.7
CLN3-240ENST00000631023 ESRRBO95718 433 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 PDGFAP04085 211 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 PRR35P0CG20 571 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 MAOAP21397 527 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 HMOX2P30519 316 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 Q0VFX4 171 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 KLRB1Q12918 225 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 SLC13A2Q13183 592 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 SLAMF1Q13291 335 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 EXT1Q16394 746 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 ZCCHC7Q8N3Z6 543 aaKnown RBP19.45■□□□□ 0.7
CLN3-240ENST00000631023 FAM47BQ8NA70 645 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 METTL6Q8TCB7 284 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 ZIM3Q96PE6 472 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 MAPKAP1Q9BPZ7 522 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 CENPHQ9H3R5 247 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 PHF11Q9UIL8 331 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 ANAPC2Q9UJX6 822 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 BSNQ9UPA5 3926 aa19.45■□□□□ 0.7
CLN3-240ENST00000631023 ULK1O75385 1050 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 ETHE1O95571 254 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 CPN2P22792 545 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 PLAG1Q6DJT9 500 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 JMJD6Q6NYC1 403 aaPredicted RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 CYP20A1Q6UW02 462 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 LRIG3Q6UXM1 1119 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 C10orf107Q8IVU9 208 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 C7orf57Q8NEG2 295 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 TCP10LQ8TDR4 215 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 FAM111AQ96PZ2 611 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 SORBS1Q9BX66 1292 aaKnown RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 DDX31Q9H8H2 851 aaKnown RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 MID1IP1Q9NPA3 183 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 FBXW2Q9UKT8 454 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 IGKV3D-11A0A0A0MRZ8 115 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 TCRBV16S1A1N1A0A5B0 115 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 TRIM13O60858 407 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 CTNSO60931 367 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 PDYNP01213 254 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 MYZAPP0CAP1 466 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 TLX1P31314 330 aaPredicted RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 BSGP35613 385 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms