RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 MAD1L1Q9Y6D9 718 aa13.61□□□□□ -0.23
PNKP-218ENST00000625299 MYOCOSA0A1B0GUC4 107 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 A0A1B0GVC2 190 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 SDR42E2A6NKP2 422 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 FAM47E-STBD1D6RA91 191 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 TGFBR3LH3BV60 316 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 RAF1P04049 648 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 IFNA16P05015 189 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 PTMSP20962 102 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 CNR1P21554 472 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 GPR143P51810 404 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 HNRNPFP52597 415 aaKnown RBP13.6□□□□□ -0.23
PNKP-218ENST00000625299 CCZ1BP86790 482 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 CCZ1P86791 482 aaPredicted RBP13.6□□□□□ -0.23
PNKP-218ENST00000625299 REEP5Q00765 189 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 SLC10A1Q14973 349 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 DEFB113Q30KQ7 82 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 HSP90AA5PQ58FG0 334 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 RIPPLY2Q5TAB7 128 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 TMEM198Q66K66 360 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 CLEC9AQ6UXN8 241 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 HSDL2Q6YN16 418 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 SCUBE1Q8IWY4 988 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 TRPV3Q8NET8 790 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 OR56A3Q8NH54 315 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 MBD6Q96DN6 1003 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 SCYL1Q96KG9 808 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 C18orf12Q96KH6 178 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 AIF1LQ9BQI0 150 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 ADAP2Q9NPF8 381 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 SACM1LQ9NTJ5 587 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 TAS2R13Q9NYV9 303 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 B4GALT7Q9UBV7 327 aa13.6□□□□□ -0.23
PNKP-218ENST00000625299 PPIEQ9UNP9 301 aaKnown RBP13.6□□□□□ -0.23
PNKP-218ENST00000625299 NSD1Q96L73 2696 aaPredicted RBP13.59□□□□□ -0.23
PNKP-218ENST00000625299 MPDZO75970 2070 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 TRGV5A0A0B4J1U4 118 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 MAGEB16A2A368 324 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 CLDN4O14493 209 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 ATE1O95260 518 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 FGGP02679 453 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 P04436 131 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 SMIM10L1P0DMW3 83 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 BMP5P22003 454 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 TACR1P25103 407 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 PEX19P40855 299 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 ZNF75DP51815 510 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 HK2P52789 917 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 CDKN2DP55273 166 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 TIAL1Q01085 375 aaKnown RBP eCLIP13.59□□□□□ -0.23
PNKP-218ENST00000625299 RUNX2Q13950 521 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 RBM20Q5T481 1227 aaKnown RBP13.59□□□□□ -0.23
PNKP-218ENST00000625299 ARMC3Q5W041 872 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 LMNTD2Q8IXW0 634 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 TMEM52Q8NDY8 209 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 FAM222BQ8WU58 562 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 CCT6BQ92526 530 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 LRRC46Q96FV0 321 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 SMIM10Q96HG1 83 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 FAM167BQ9BTA0 163 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 TRIM54Q9BYV2 358 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 AICDAQ9GZX7 198 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 SEMA4BQ9NPR2 832 aaPredicted RBP13.59□□□□□ -0.23
PNKP-218ENST00000625299 TUBA8Q9NY65 449 aaPredicted RBP13.59□□□□□ -0.23
PNKP-218ENST00000625299 SPRR3Q9UBC9 169 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 GUCA1BQ9UMX6 200 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 CLCA3PQ9Y6N3 262 aa13.59□□□□□ -0.23
PNKP-218ENST00000625299 SUSD5O60279 629 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 SERPINA6P08185 405 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 INHBBP09529 407 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 CCL3P10147 92 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 GABRA1P14867 456 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 ENDOUP21128 410 aaKnown RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 ASCL1P50553 236 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 AP1S2P56377 157 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 HSD17B7P56937 341 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 RAB38P57729 211 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 ELAVL1Q15717 326 aaKnown RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 TMEM132CQ8N3T6 1108 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 RNF10Q8N5U6 811 aaKnown RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 RELL2Q8NC24 303 aaPredicted RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 ATL1Q8WXF7 558 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 RNASE6Q93091 150 aaKnown RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 GAL3ST3Q96A11 431 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 FBXL8Q96CD0 374 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 CAPZA3Q96KX2 299 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 SERPINB12Q96P63 405 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 OR8D2Q9GZM6 311 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 PELI2Q9HAT8 420 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 TRMT1Q9NXH9 659 aaKnown RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 MRPS33Q9Y291 106 aaKnown RBP13.58□□□□□ -0.24
PNKP-218ENST00000625299 ZKSCAN5Q9Y2L8 839 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 CLDN16Q9Y5I7 305 aa13.58□□□□□ -0.24
PNKP-218ENST00000625299 JMJD1CQ15652 2540 aa13.57□□□□□ -0.24
PNKP-218ENST00000625299 NCKAP5O14513 1909 aa13.57□□□□□ -0.24
PNKP-218ENST00000625299 HSPB2A8KAH6 182 aa13.57□□□□□ -0.24
PNKP-218ENST00000625299 SYT5O00445 386 aa13.57□□□□□ -0.24
PNKP-218ENST00000625299 DVL2O14641 736 aa13.57□□□□□ -0.24
PNKP-218ENST00000625299 ERI3O43414 337 aaKnown RBP13.57□□□□□ -0.24
PNKP-218ENST00000625299 B3GALT2O43825 422 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms