RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PPP2CAP67775 309 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 CDK5R2Q13319 367 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 ZNF691Q5VV52 312 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 DGLUCYQ7Z3D6 616 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 SPARTQ8N0X7 666 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 CACTIN-AS1Q8N1I8 211 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 MIPOL1Q8TD10 442 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 TM4SF18Q96CE8 201 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 COG8Q96MW5 612 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 KCNC2Q96PR1 638 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 AIF1LQ9BQI0 150 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 DOHHQ9BU89 302 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 MYNNQ9NPC7 610 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 LHX9Q9NQ69 397 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 C1GALT1Q9NS00 363 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 KRT84Q9NSB2 600 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 NDUFAF4Q9P032 175 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 SCHIP1Q9P0W5 487 aaPredicted RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 MDC1Q14676 2089 aaKnown RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 ARHGEF17Q96PE2 2063 aaPredicted RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 SLC1A7O00341 560 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 NARSO43776 548 aaKnown RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 NME6O75414 186 aaPredicted RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 CDK4P11802 303 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 BSGP35613 385 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 TRIM23P36406 574 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 CDH12P55289 794 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 SELENOWP63302 87 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 PDE7AQ13946 482 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 GCNT6Q5T4J0 391 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 BROXQ5VW32 411 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 KDM4DQ6B0I6 523 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 TTC29Q8NA56 475 aaPredicted RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 TMEM145Q8NBT3 493 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 SMPDL3AQ92484 453 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 FCRL4Q96PJ5 515 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 SYNPO2LQ9H987 977 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 AMBNQ9NP70 447 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 DNAAF2Q9NVR5 837 aaKnown RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 OBP2AQ9NY56 170 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 WARS2Q9UGM6 360 aaKnown RBP10.13□□□□□ -0.79
CUX1-221ENST00000622516 GMPPBQ9Y5P6 360 aa10.13□□□□□ -0.79
CUX1-221ENST00000622516 PRAMEF10O60809 474 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 RNGTTO60942 597 aaKnown RBP10.12□□□□□ -0.79
CUX1-221ENST00000622516 ADAM23O75077 832 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 INMTO95050 263 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 EML2O95834 649 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 VIPP01282 170 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 FPR1P21462 350 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 AK4P27144 223 aaPredicted RBP10.12□□□□□ -0.79
CUX1-221ENST00000622516 PHEXP78562 749 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CDK6Q00534 326 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 LRRC74AQ0VAA2 488 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 RPA4Q13156 261 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 DUSP7Q16829 419 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CEACAM20Q6UY09 585 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CCDC71Q8IV32 467 aaPredicted RBP10.12□□□□□ -0.79
CUX1-221ENST00000622516 ERI1Q8IV48 349 aaKnown RBP10.12□□□□□ -0.79
CUX1-221ENST00000622516 FRMD1Q8N878 549 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CCL4L1Q8NHW4 92 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 UBE2E3Q969T4 207 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CAMK1GQ96NX5 476 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 MS4A8Q9BY19 250 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 PHPT1Q9NRX4 125 aaPredicted RBP10.12□□□□□ -0.79
CUX1-221ENST00000622516 SPHK1Q9NYA1 384 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 ANGPTL1O95841 491 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 EGFP01133 1207 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 PCGF2P35227 344 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 IGFALSP35858 605 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 MAP2K4P45985 399 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CSNK1G2P78368 415 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 ZNF750Q32MQ0 723 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 UBE3DQ7Z6J8 389 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 PGBD3Q8N328 593 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 OXR1Q8N573 874 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 OR52N2Q8NGI0 321 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 OR2A1Q8NGT9 310 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 HDAC2Q92769 488 aaKnown RBP10.12□□□□□ -0.79
CUX1-221ENST00000622516 RDH12Q96NR8 316 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 FEVQ99581 238 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 AICDAQ9GZX7 198 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 FGF22Q9HCT0 170 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CLEC1BQ9P126 229 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 ERVK-18Q9QC07 812 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 CFAP54Q96N23 3096 aa10.12□□□□□ -0.79
CUX1-221ENST00000622516 A0A1W2PS29 197 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 FAM227AF5H4B4 570 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 M0R129 80 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 B4GALT2O60909 372 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ABCB7O75027 752 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ADH1BP00325 375 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 DNTTP04053 509 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ZNF182P17025 639 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 ADPRHP54922 357 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ITGA1P56199 1179 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 RPS21P63220 83 aaKnown RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 EPS8Q12929 822 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 ZNF776Q68DI1 518 aaPredicted RBP10.11□□□□□ -0.79
CUX1-221ENST00000622516 CCDC81Q6ZN84 652 aa10.11□□□□□ -0.79
CUX1-221ENST00000622516 NUDT18Q6ZVK8 323 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms