RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HHIPQ96QV1 700 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 TRIB3Q96RU7 358 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 CD244Q9BZW8 370 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 NSUN3Q9H649 340 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ERVMER34-1Q9H9K5 563 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SARS2Q9NP81 518 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 EMC7Q9NPA0 242 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 UCKL1Q9NWZ5 548 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 GPRC5BQ9NZH0 403 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 NDUFAF4Q9P032 175 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ATP6V1HQ9UI12 483 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 FKBP7Q9Y680 259 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 LTBP2Q14767 1821 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 A0A1W2PRG6 482 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SMLR1H3BR10 107 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SGK494L7N484 410 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 TOR1AO14656 332 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 FABP7O15540 132 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PRMT3O60678 531 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 CSO75390 466 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 RRASP10301 218 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF250P15622 560 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PRPS1L1P21108 318 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 MAN2A2P49641 1150 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 RGS4P49798 205 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 SPIBQ01892 262 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 MXD1Q05195 221 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PTGES3Q15185 160 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PTCHD3Q3KNS1 767 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 GPR155Q7Z3F1 870 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 GPAT4Q86UL3 456 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 UBTD2Q8WUN7 234 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 LPPQ93052 612 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 MYLPFQ96A32 169 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 KCTD7Q96MP8 289 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 NIPSNAP1Q9BPW8 284 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 FAM126AQ9BYI3 521 aaPredicted RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 POLR2J2Q9GZM3 115 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 CRISPLD1Q9H336 500 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 TXNL4BQ9NX01 149 aaKnown RBP10.37□□□□□ -0.75
UPF3A-212ENST00000619079 WWOXQ9NZC7 414 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 UBQLN2Q9UHD9 624 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 PPT2Q9UMR5 302 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 DLGAP4Q9Y2H0 992 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 DHRS7Q9Y394 339 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 OARD1Q9Y530 152 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 ASB4Q9Y574 426 aa10.37□□□□□ -0.75
UPF3A-212ENST00000619079 TRAV19A0A0A6YYK7 116 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 TUBAL3A6NHL2 446 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ZAR1LA6NP61 321 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 OR1I1O60431 355 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 EPB42P16452 691 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 HK1P19367 917 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PRPH2P23942 346 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 CLCN7P51798 805 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 GBX2P52951 348 aaPredicted RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ELOAQ14241 798 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ALFQ53S48 1182 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 UBXN11Q5T124 520 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 FAM92BQ6ZTR7 304 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 LUZP2Q86TE4 346 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PHC2Q8IXK0 858 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 TDHQ8IZJ6 230 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 IL17RCQ8NAC3 791 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 CSGALNACT1Q8TDX6 532 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PHF21AQ96BD5 680 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 TSSK3Q96PN8 268 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 GFM1Q96RP9 751 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 EGFL8Q99944 293 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 TMEM43Q9BTV4 400 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ACPTQ9BZG2 426 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 MED28Q9H204 178 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 SLC25A19Q9HC21 320 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 FZD3Q9NPG1 666 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 TLR8Q9NR97 1041 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 CUEDC1Q9NWM3 386 aaPredicted RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 FAM120CQ9NX05 1096 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 MGAT4AQ9UM21 535 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PCDHB1Q9Y5F3 818 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 STON1Q9Y6Q2 735 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ARRDC5A6NEK1 342 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 NDUFA2O43678 99 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 RAMP2O60895 175 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 HOXD4P09016 255 aaPredicted RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 SDC1P18827 310 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 LPOP22079 712 aaPredicted RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PCGF2P35227 344 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 CDH12P55289 794 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 SNRPGP62308 76 aaKnown RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 SELENOWP63302 87 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 HSF2Q03933 536 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 IFI44LQ53G44 452 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 KLHL22Q53GT1 634 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF648Q5T619 568 aaPredicted RBP10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ALG1LQ6GMV1 187 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 ZNF621Q6ZSS3 439 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 NPAS4Q8IUM7 802 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 NANOGP1Q8N7R0 232 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PLA2G15Q8NCC3 412 aa10.36□□□□□ -0.75
UPF3A-212ENST00000619079 PIH1D2Q8WWB5 315 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms