RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DLGAP1O14490 977 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 TNFRSF10BO14763 440 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 TEX28O15482 410 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 GJA8P48165 433 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 SLC9A3P48764 834 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF45Q02386 682 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF627Q7L945 461 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ZSWIM9Q86XI8 627 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 PIANPQ8IYJ0 282 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 OR8J1Q8NGP2 316 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 HUS1BQ8NHY5 278 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 FNDC8Q8TC99 324 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 F2RL3Q96RI0 385 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 PIP5K1AQ99755 562 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ASCC3Q8N3C0 2202 aaKnown RBP13.47□□□□□ -0.25
CPSF1-212ENST00000616140 DNAJC25-GNG10A0A024R161 153 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 SH3PXD2BA1X283 911 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 A8MV72 311 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF865P0CJ78 1059 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-212ENST00000616140 F8A1P23610 371 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 OR3A3P47888 321 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 OR3A2P47893 321 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 MAB21L1Q13394 359 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ARFRP1Q13795 201 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF234Q14588 700 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 ODF4Q2M2E3 257 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 SLC36A4Q6YBV0 504 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 LHFPL3Q86UP9 236 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 IQCF2Q8IXL9 164 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 SDR16C5Q8N3Y7 309 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 OSTF1Q92882 214 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 GATA6Q92908 595 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 TTYH2Q9BSA4 534 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 CST11Q9H112 138 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 DPAGT1Q9H3H5 408 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 TLR9Q9NR96 1032 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 C14orf119Q9NWQ9 140 aa13.47□□□□□ -0.25
CPSF1-212ENST00000616140 CICQ96RK0 1608 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-212ENST00000616140 A6NHS1 94 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 FGF4P08620 206 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 HOXB2P14652 356 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 TYRP1P17643 537 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 GGT1P19440 569 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 FPGSQ05932 587 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 NFATC3Q12968 1075 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 CLCA4Q14CN2 919 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 SPHARQ15513 63 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 MEDAGQ5VYS4 303 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 CES4AQ5XG92 561 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 CEP68Q76N32 757 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 ENAMQ9NRM1 1142 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 NLGN3Q9NZ94 848 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 MED11Q9P086 117 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 SLC16A5O15375 505 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 MITFO75030 526 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-212ENST00000616140 ZNF821O75541 412 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-212ENST00000616140 MPC1LP0DKB6 136 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 LAMP1P11279 417 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 PMS2P3Q13401 168 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 CMPK2Q5EBM0 449 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 TRAM1L1Q8N609 369 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 YIPF7Q8N8F6 280 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 ZBTB8BQ8NAP8 495 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-212ENST00000616140 PHOSPHO1Q8TCT1 267 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 DNAJA4Q8WW22 397 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-212ENST00000616140 TRIB3Q96RU7 358 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 HCN2Q9UL51 889 aa13.46□□□□□ -0.25
CPSF1-212ENST00000616140 BOLA2-SMG1P6H3BVE0 249 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 TSPAN4O14817 238 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 MYF6P23409 242 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 PRDX3P30048 256 aaKnown RBP13.46□□□□□ -0.26
CPSF1-212ENST00000616140 UGT8Q16880 541 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 ERN2Q76MJ5 926 aaKnown RBP13.46□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF527Q8NB42 609 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 ACVR1CQ8NER5 493 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 OR51A7Q8NH64 312 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 MAL2Q969L2 176 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 TBCCD1Q9NVR7 557 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 IL17CQ9P0M4 197 aa13.46□□□□□ -0.26
CPSF1-212ENST00000616140 RGPD2P0DJD1 1756 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 PLOD2O00469 737 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 RHOP08100 348 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 SYN1P17600 705 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 ATP5A1P25705 553 aaKnown RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 AFF1P51825 1210 aaKnown RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 NCS1P62166 190 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 TRNP1Q6NT89 227 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 NCEH1Q6PIU2 408 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 KDELC1Q6UW63 502 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 C6orf120Q7Z4R8 191 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 NEIL3Q8TAT5 605 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 FRS2Q8WU20 508 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 OTUB2Q96DC9 234 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 C14orf105Q9NVL8 296 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 ACSL5Q9ULC5 683 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 MBLAC1A4D2B0 266 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-212ENST00000616140 COQ9O75208 318 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 SLC16A8O95907 504 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 MT-ND5P03915 603 aa13.45□□□□□ -0.26
CPSF1-212ENST00000616140 CAMK1Q14012 370 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms