RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DMTNQ08495 405 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SF3A3Q12874 501 aaKnown RBP eCLIP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 IL11RAQ14626 422 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SLMAPQ14BN4 828 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 NTRK2Q16620 822 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF674Q2M3X9 581 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 C2orf76Q3KRA6 126 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 GLIPR1L2Q4G1C9 344 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF569Q5MCW4 686 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ERMARDQ5T6L9 678 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ABLIM2Q6H8Q1 611 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 NADSYN1Q6IA69 706 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 RAB12Q6IQ22 244 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TMEM65Q6PI78 240 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PET117Q6UWS5 81 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 UNC5DQ6UXZ4 953 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 HIPK1Q86Z02 1210 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PELI3Q8N2H9 469 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ENDOVQ8N8Q3 282 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 C12orf29Q8N999 325 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 CLEC1AQ8NC01 280 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 OR2A12Q8NGT7 310 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 GABPB2Q8TAK5 448 aaPredicted RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SHC3Q92529 594 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ARHGEF2Q92974 986 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PTP4A1Q93096 173 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 FAM162AQ96A26 154 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 CCDC114Q96M63 670 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TAAR6Q96RI8 345 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 APOOQ9BUR5 198 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 THUMPD3Q9BV44 507 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ACAT2Q9BWD1 397 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 UCK2Q9BZX2 261 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 STN1Q9H668 368 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SMYD3Q9H7B4 428 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 RMI1Q9H9A7 625 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 FGF22Q9HCT0 170 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 COQ3Q9NZJ6 369 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TAAR2Q9P1P5 351 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 HCN3Q9P1Z3 774 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ARMCX1Q9P291 453 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 UBA2Q9UBT2 640 aaPredicted RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 IL36AQ9UHA7 158 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 LIMA1Q9UHB6 759 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TBK1Q9UHD2 729 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 RABL2BQ9UNT1 228 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 KCNE2Q9Y6J6 123 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 CHD5Q8TDI0 1954 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ARID1AO14497 2285 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 TMEM202A6NGA9 273 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SH2D7A6NKC9 451 aaPredicted RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 A8MV72 311 aaPredicted RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PSMD9O00233 223 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SEC14L2O76054 403 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 TM7SF2O76062 418 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 EIF2S1P05198 315 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SNRNP70P08621 437 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CCDC175P0C221 793 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 FGF5P12034 268 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CCNB1P14635 433 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 AK4P27144 223 aaPredicted RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 GKP32189 559 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 OTX2P32243 289 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PEX19P40855 299 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 EIF3BP55884 814 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 UBASH3AP57075 661 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 IL1RL1Q01638 556 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 TFF3Q07654 80 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 MORF4L2Q15014 288 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 LARS2Q15031 903 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PPA1Q15181 289 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 NECTIN1Q15223 517 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 ZRSR1Q15695 479 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 KLHL40Q2TBA0 621 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CHRFAM7AQ494W8 412 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF585BQ52M93 769 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 AWAT1Q58HT5 328 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF766Q5HY98 468 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 LRRC73Q5JTD7 316 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 C9orf152Q5JTZ5 239 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CACHD1Q5VU97 1274 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PWWP2BQ6NUJ5 590 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 TMEM154Q6P9G4 183 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 KLHL35Q6PF15 583 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SLC30A9Q6PML9 568 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 WDR74Q6RFH5 385 aaPredicted RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 C12orf54Q6X4T0 127 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 NUP54Q7Z3B4 507 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 PIWIL3Q7Z3Z3 882 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 RAB43Q86YS6 212 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 ARHGAP18Q8N392 663 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CPSF7Q8N684 471 aaKnown RBP4.11□□□□□ -1.75
LINC00540-201ENST00000611481 C10orf53Q8N6V4 93 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 POC5Q8NA72 575 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 CATSPER1Q8NEC5 780 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 OR56A4Q8NGH8 313 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 SGMS2Q8NHU3 365 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 GRK7Q8WTQ7 553 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 ZDHHC12Q96GR4 267 aa4.11□□□□□ -1.75
LINC00540-201ENST00000611481 MAGED4Q96JG8 741 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms