RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SCIMPQ6UWF3 145 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 CES3Q6UWW8 571 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 RAD9BQ6WBX8 426 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 TAOK1Q7L7X3 1001 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 MAATS1Q7Z4T9 603 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 MDGA2Q7Z553 956 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 GALNT7Q86SF2 657 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ZNF227Q86WZ6 799 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 CCDC71Q8IV32 467 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 KIF2BQ8N4N8 673 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 MARVELD2Q8N4S9 558 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 APCDD1LQ8NCL9 501 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 MORN4Q8NDC4 146 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ACRBPQ8NEB7 543 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SRFBP1Q8NEF9 429 aaKnown RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 OR2M7Q8NG81 312 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 OR5T3Q8NGG3 340 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 OR56A3Q8NH54 315 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 GIMAP7Q8NHV1 300 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 UTP15Q8TED0 518 aaKnown RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 GAL3ST3Q96A11 431 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ALKBH8Q96BT7 664 aaKnown RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 FBXL8Q96CD0 374 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 DTNBP1Q96EV8 351 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ART5Q96L15 291 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 AARSD1Q9BTE6 412 aaKnown RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 KRTAP3-3Q9BYR6 98 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 KRTAP3-2Q9BYR7 98 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 UCK2Q9BZX2 261 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ATG10Q9H0Y0 220 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 DEFB127Q9H1M4 99 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 EXO5Q9H790 373 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 SYNPO2LQ9H987 977 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 COPS7BQ9H9Q2 264 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 FBXO6Q9NRD1 293 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 PRTFDC1Q9NRG1 225 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 RASSF1Q9NS23 344 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 CCM2LQ9NUG4 571 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 MYOTQ9UBF9 498 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 ZNF629Q9UEG4 869 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 FBXO5Q9UKT4 447 aa5.85□□□□□ -1.47
CUX1-220ENST00000607092 BOKQ9UMX3 212 aaPredicted RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 REXO2Q9Y3B8 237 aaKnown RBP5.85□□□□□ -1.47
CUX1-220ENST00000607092 TRGV5A0A0B4J1U4 118 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 ZCWPW2A0A1B0GU75 182 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 OR2W5A6NFC9 320 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 A6NNC1 897 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 FAM166BA8MTA8 275 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 CDH16O75309 829 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 WISP2O76076 250 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PDE9AO76083 593 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 FGGP02679 453 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 STATHP02808 62 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 IFNA16P05015 189 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 ZSCAN5DPP0CG00 497 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 GLI4P10075 376 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 ETS1P14921 441 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 HOXB4P17483 251 aaPredicted RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 MAOAP21397 527 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PPP2R1BP30154 601 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 GCKP35557 465 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 RFC3P40938 356 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 RPL21P46778 160 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 RAB38P57729 211 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 GPR85P60893 370 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 RAB8AP61006 207 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 EEF1A1P68104 462 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 REEP5Q00765 189 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 SORDQ00796 357 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 KEAP1Q14145 624 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 DAZAP2Q15038 168 aaPredicted RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 CEBPEQ15744 281 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 MPEG1Q2M385 716 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 FBXL19-AS1Q494R0 122 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 HSP90AA5PQ58FG0 334 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 EMC4Q5J8M3 183 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 TBCELQ5QJ74 424 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 EEF1A1P5Q5VTE0 462 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 ZNF549Q6P9A3 640 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 TRIM40Q6P9F5 258 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PAMR1Q6UXH9 720 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 FAM47EQ6ZV65 393 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 NCCRP1Q6ZVX7 275 aaPredicted RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 TRILQ7L0X0 811 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 WDR53Q7Z5U6 358 aaPredicted RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 DENND6AQ8IWF6 608 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 SCUBE1Q8IWY4 988 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 PM20D2Q8IYS1 436 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 KRT78Q8N1N4 520 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 LIX1Q8N485 282 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 NKAPQ8N5F7 415 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 SLC15A4Q8N697 577 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 TRIM58Q8NG06 486 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 OR52N2Q8NGI0 321 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 SLC22A8Q8TCC7 542 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 GRK7Q8WTQ7 553 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 EEF1AKMT1Q8WVE0 214 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 RNASE6Q93091 150 aaKnown RBP5.84□□□□□ -1.47
CUX1-220ENST00000607092 NCLNQ969V3 563 aa5.84□□□□□ -1.47
CUX1-220ENST00000607092 HSPBAP1Q96EW2 488 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms