RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	LAS2	Q8IYD9	372 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	KRT78	Q8N1N4	520 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	RBMXL3	Q8N7X1	1067 aa	Known RBP	12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	OR4K1	Q8NGD4	311 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	HUS1B	Q8NHY5	278 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	REPS1	Q96D71	796 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	IP6K3	Q96PC2	410 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	LRRC37B	Q96QE4	947 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	SMAD5	Q99717	465 aa	Known RBP	12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	CCT7	Q99832	543 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	C17orf62	Q9BQA9	187 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	C1orf50	Q9BV19	199 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	MFRP	Q9BY79	579 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	KLHL25	Q9H0H3	589 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	PFDN4	Q9NQP4	134 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	SAR1A	Q9NR31	198 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	LUZP4	Q9P127	313 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	CCL27	Q9Y4X3	112 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	PCDHGA11	Q9Y5H2	935 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	DOPEY1	Q5JWR5	2465 aa		12.02	□□□□□ -0.49
UPF1-208	ENST00000600012	CREBBP	Q92793	2442 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	MYO9A	B2RTY4	2548 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012		A0A0J9YY10	115 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012		A6NL46	340 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	CCT8L1P	A6NM43	557 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	MAGEB17	A8MXT2	336 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	LSM1	O15116	133 aa	Known RBP	12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	OR1F1	O43749	312 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	CCDC22	O60826	627 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	ETHE1	O95571	254 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	SERPINA6	P08185	405 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	MAG	P20916	626 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	AGXT	P21549	392 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	CXCR2	P25025	360 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	GRIA3	P42263	894 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	RPS13	P62277	151 aa	Known RBP	12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	RPL38	P63173	70 aa	Known RBP	12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	SLC5A12	Q1EHB4	618 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	ATP6AP1L	Q52LC2	224 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	SPDYA	Q5MJ70	313 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	FAM69B	Q5VUD6	431 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	ZNF425	Q6IV72	752 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	TMIGD1	Q6UXZ0	262 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	CLNK	Q7Z7G1	428 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	PAQR7	Q86WK9	346 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	GPR135	Q8IZ08	494 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	UBE2E3	Q969T4	207 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	TRAPPC9	Q96Q05	1148 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	ZNF385D	Q9H6B1	395 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	DMRT3	Q9NQL9	472 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	TMEM184C	Q9NVA4	438 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	C5AR2	Q9P296	337 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	MAP10	Q9P2G4	905 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	SLC12A4	Q9UP95	1085 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	TRIM33	Q9UPN9	1127 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	POLR3H	Q9Y535	204 aa	Predicted RBP	12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	PCSK5	Q92824	1860 aa		12.01	□□□□□ -0.49
UPF1-208	ENST00000600012	NUP210L	Q5VU65	1888 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	SCN3A	Q9NY46	2000 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	PRRC2C	Q9Y520	2896 aa	Known RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	TRBC2	A0A5B9	178 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	SERTM1	A2A2V5	107 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	UBD	O15205	165 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	ZNF749	O43361	778 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	LCMT2	O60294	686 aa	Known RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	UBOX5	O94941	541 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	STATH	P02808	62 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	RNF224	P0DH78	156 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	BCL6	P41182	706 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	SCTR	P47872	440 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	MRPL49	Q13405	166 aa	Known RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	EIF2S3L	Q2VIR3	472 aa	Known RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	AP5B1	Q2VPB7	878 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	C6orf136	Q5SQH8	315 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	METTL21C	Q5VZV1	264 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	ZNF385C	Q66K41	422 aa	Predicted RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	FCRL6	Q6DN72	434 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	FIGLA	Q6QHK4	219 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	CHSY3	Q70JA7	882 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	ZNF771	Q7L3S4	317 aa	Predicted RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	MRGPRE	Q86SM8	312 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	TREML1	Q86YW5	311 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	GBP7	Q8N8V2	638 aa	Predicted RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	ANKRD53	Q8N9V6	530 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	FNDC5	Q8NAU1	212 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	N4BP2L2	Q92802	583 aa	Predicted RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	PPP3R2	Q96LZ3	170 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	NT5DC2	Q9H857	520 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	SYNPO2L	Q9H987	977 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	LRTM1	Q9HBL6	345 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012	COPG1	Q9Y678	874 aa	Known RBP	12	□□□□□ -0.49
UPF1-208	ENST00000600012	AP1M2	Q9Y6Q5	423 aa		12	□□□□□ -0.49
UPF1-208	ENST00000600012		A1L4Q6	167 aa		11.99	□□□□□ -0.49
UPF1-208	ENST00000600012	OR2A25	A4D2G3	310 aa		11.99	□□□□□ -0.49
UPF1-208	ENST00000600012	ANKDD1B	A6NHY2	528 aa		11.99	□□□□□ -0.49
UPF1-208	ENST00000600012	SEC22B	O75396	215 aa		11.99	□□□□□ -0.49
UPF1-208	ENST00000600012	RSL1D1	O76021	490 aa	Known RBP	11.99	□□□□□ -0.49
UPF1-208	ENST00000600012	TGFB1	P01137	390 aa		11.99	□□□□□ -0.49
UPF1-208	ENST00000600012	IGHE	P01854	428 aa		11.99	□□□□□ -0.49

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